batmen-lab / diamondLinks
Error-controlled interaction discovery in machine learning models
☆23Updated 7 months ago
Alternatives and similar repositories for diamond
Users that are interested in diamond are comparing it to the libraries listed below
Sorting:
- ☆24Updated 7 months ago
- Paper collection for single cell foundation models☆35Updated last year
- ☆25Updated last year
- A curated list of resources for "Flow Matching Meets Biology and Life Science: A Survey"☆59Updated 4 months ago
- Benchmarks for classification of genomic sequences☆171Updated 5 months ago
- Reusability report of scBERT☆16Updated last year
- Dirichlet Diffusion Score Model for Biological Sequence Generation.☆64Updated 11 months ago
- Contextual AI models for single-cell protein biology☆96Updated 11 months ago
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆32Updated last year
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆142Updated 11 months ago
- ☆45Updated 2 years ago
- code for paper: Identifiability Guarantees for Causal Disentanglement from Soft Interventions☆15Updated 2 years ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆128Updated last year
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆329Updated last year
- ☆14Updated last week
- Code and dataset for SNP2Vec paper☆21Updated 2 years ago
- [NeurIPS 2024] Model Decides How to Tokenize: Adaptive DNA Sequence Tokenization with MxDNA☆22Updated 10 months ago
- RiboNucleic Acid (RNA) Language Model☆151Updated 3 months ago
- The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)☆37Updated 2 years ago
- ☆34Updated 3 months ago
- ☆33Updated last year
- Gene2Vec: Distributed Representation of Genes Based on Co-Expression☆128Updated 3 years ago
- ☆33Updated 3 weeks ago
- Single-Cell (Perturbation) Model Library☆89Updated 2 weeks ago
- DANCE: a deep learning library and benchmark platform for single-cell analysis☆384Updated 2 weeks ago
- Primary RNA sequence model☆42Updated last year
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆101Updated last year
- Single-Cell Multimodal Prediction via Transformer☆28Updated last year
- A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.☆285Updated 8 months ago
- AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…☆104Updated 2 weeks ago