bozeklab / worm-swinLinks
Repository for WormSwin: Instance segmentation of C. elegans using vision transformer as appeared in Nature Scientific Reports 2023.
☆13Updated 2 years ago
Alternatives and similar repositories for worm-swin
Users that are interested in worm-swin are comparing it to the libraries listed below
Sorting:
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆120Updated last year
- Developing a Brain Atlas through Deep Learning☆53Updated last month
- Automated 3D brain registration with support for multiple species and atlases.☆137Updated last month
- Image restoration for fluorescence microscopy☆318Updated last year
- ☆199Updated 2 years ago
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆67Updated 6 years ago
- 🌈☆62Updated 6 months ago
- NumPy and Tensorflow implementation of the Multidimensional Contrast Limited Adaptive Histogram Equalization (MCLAHE) procedure☆49Updated 3 years ago
- Software platform for clinical neuroimaging studies☆260Updated 2 weeks ago
- CloudReg☆11Updated last year
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆32Updated 2 years ago
- A PyTorch-based library for working with 3D and 2D convolutional neural networks, with focus on semantic segmentation of volumetric biome…☆168Updated last year
- A generalizable application framework for segmentation, regression, and classification using PyTorch☆186Updated last month
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆179Updated this week
- Read and write Neuroglancer datasets programmatically.☆159Updated this week
- This is our implementation of Probabilistic Noise2Void☆75Updated 2 years ago
- ☆31Updated 4 years ago
- ☆90Updated 4 months ago
- Joint training of denoising and segmentation.☆74Updated 2 years ago
- Repository on the collaborative IVADO medical imaging project between the Mila and NeuroPoly labs.☆163Updated 4 months ago
- Automated 3D cell detection in very large images☆218Updated last month
- A framework for developing neural network models for 3D image processing.☆166Updated this week
- Scalable Instance Segmentation using PyTorch & PyTorch Lightning.☆145Updated 5 months ago
- Three-dimensional propagation and time-reversal of fluorescence images☆40Updated 6 years ago
- Track cells and build cell lineages☆35Updated last year
- Multi-modal Image Registration And Connectivity anaLysis☆45Updated last month
- This repository hosts the code for HDN (associated with the paper https://arxiv.org/pdf/2104.01374.pdf) for pixel and structured noise re…☆35Updated last year
- Blue Brain multi-modal registration and alignment toolbox☆11Updated last year
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆74Updated 4 years ago
- ☆38Updated last year