Alternatives and similar repositories for worm-swin

Users that are interested in worm-swin are comparing it to the libraries listed below

• juglab / EmbedSeg
  Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images
  ☆118Updated last year
• sartorius-research / LIVECell
  ☆197Updated 2 years ago
• alexklibisz / deep-calcium
  Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)
  ☆29Updated 2 years ago
• funkelab / lsd
  🌈
  ☆60Updated 5 months ago
• zudi-lin / pytorch_connectomics
  PyTorch Connectomics: segmentation toolbox for EM connectomics
  ☆179Updated 2 months ago
• funalab / QCANet
  Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development
  ☆31Updated 2 years ago
• ELEKTRONN / elektronn3
  A PyTorch-based library for working with 3D and 2D convolutional neural networks, with focus on semantic segmentation of volumetric biome…
  ☆168Updated last year
• WenChentao / 3DeeCellTracker
  A python algorithm for tracking cells in 3D time lapse images.
  ☆61Updated last week
• juglab / DenoiSeg
  Joint training of denoising and segmentation.
  ☆74Updated 2 years ago
• lmb-freiburg / Unet-Segmentation
  The U-Net Segmentation plugin for Fiji (ImageJ)
  ☆88Updated 2 years ago
• soltanianzadeh / STNeuroNet
  Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…
  ☆67Updated 5 years ago
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆178Updated 2 weeks ago
• neurodata / CloudReg
  CloudReg
  ☆11Updated last year
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆136Updated 3 weeks ago
• maweigert / neubias_academy_stardist
  ☆31Updated 4 years ago
• CSBDeep / CSBDeep
  Image restoration for fluorescence microscopy
  ☆315Updated 10 months ago
• juglab / pn2v
  This is our implementation of Probabilistic Noise2Void
  ☆75Updated 2 years ago
• VincentStimper / mclahe
  NumPy and Tensorflow implementation of the Multidimensional Contrast Limited Adaptive Histogram Equalization (MCLAHE) procedure
  ☆49Updated 3 years ago
• AdaptiveMotorControlLab / CellSeg3D
  A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks
  ☆103Updated last month
• computationalpathologygroup / pythostitcher
  Python tool for stitching histopathology tissue fragments into artificial whole-mounts.
  ☆23Updated 5 months ago
• yanglf1121 / NuSeT
  NuSeT: A Deep Learning Tool for Reliably Separating and Analyzing Crowded Cells
  ☆20Updated 5 years ago
• seung-lab / cloud-volume
  Read and write Neuroglancer datasets programmatically.
  ☆156Updated 2 weeks ago
• mpicbg-csbd / structured_N2V
  Code for StructN2V method and experiments
  ☆22Updated 3 years ago
• MMV-Lab / mmv_im2im
  Python package for deep learning based image to image transformation
  ☆53Updated 2 weeks ago
• lmbneuron / D-LMBmap
  ☆37Updated last year
• kevinjohncutler / omnipose
  Omnipose: a high-precision solution for morphology-independent cell segmentation
  ☆118Updated 3 weeks ago
• clEsperanto / pyclesperanto_prototype
  GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
  ☆231Updated 6 months ago
• TuragaLab / DECODE
  This is the official implementation of our publication "Deep learning enables fast and dense single-molecule localization with high accur…
  ☆110Updated 2 years ago
• itsasimiqbal / SeBRe
  Developing a Brain Atlas through Deep Learning
  ☆53Updated 3 weeks ago
• BlueBrain / atlas-alignment
  Blue Brain multi-modal registration and alignment toolbox
  ☆11Updated last year