Alternatives and similar repositories for worm-swin

Users that are interested in worm-swin are comparing it to the libraries listed below

• alexklibisz / deep-calcium
  Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)
  ☆29Updated 3 years ago
• sartorius-research / LIVECell
  ☆205Updated 2 years ago
• maweigert / neubias_academy_stardist
  ☆31Updated 4 years ago
• itsasimiqbal / SeBRe
  Developing a Brain Atlas through Deep Learning
  ☆53Updated 5 months ago
• soltanianzadeh / STNeuroNet
  Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…
  ☆67Updated 6 years ago
• juglab / EmbedSeg
  Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images
  ☆127Updated last year
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆141Updated this week
• BlueBrain / atlas-alignment
  Blue Brain multi-modal registration and alignment toolbox
  ☆11Updated last year
• AdaptiveMotorControlLab / CellSeg3D
  A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks
  ☆112Updated 3 months ago
• puppy101puppy / Deep-Z
  Three-dimensional propagation and time-reversal of fluorescence images
  ☆40Updated 6 years ago
• funalab / QCANet
  Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development
  ☆32Updated 2 years ago
• neurodata / CloudReg
  CloudReg
  ☆11Updated last year
• funkelab / lsd
  🌈
  ☆66Updated 3 months ago
• m4ln / stainTransfer_CycleGAN_pytorch
  Image-to-Image Translation in PyTorch
  ☆24Updated 2 years ago
• WenChentao / 3DeeCellTracker
  A python algorithm for tracking cells in 3D deforming organs
  ☆66Updated last month
• iteal / wormpose
  WormPose: Image synthesis and convolutional networks for pose estimation in C. elegans
  ☆53Updated 2 years ago
• brainglobe / cellfinder
  Automated 3D cell detection in very large images
  ☆223Updated this week
• ELEKTRONN / elektronn3
  A PyTorch-based library for working with 3D and 2D convolutional neural networks, with focus on semantic segmentation of volumetric biome…
  ☆169Updated 2 years ago
• VincentStimper / mclahe
  NumPy and Tensorflow implementation of the Multidimensional Contrast Limited Adaptive Histogram Equalization (MCLAHE) procedure
  ☆49Updated 3 years ago
• PytorchConnectomics / pytorch_connectomics
  PyTorch Connectomics: segmentation toolbox for EM connectomics
  ☆186Updated 3 weeks ago
• axondeepseg / axondeepseg
  Axon/Myelin segmentation using Deep Learning
  ☆124Updated 3 weeks ago
• brainglobe / cellfinder-core
  Standalone cellfinder cell detection algorithm
  ☆20Updated 2 years ago
• vanvalenlab / deepcell-tracking
  Track cells and build cell lineages
  ☆35Updated last year
• SBU-BMI / champkit
  Benchmarking toolkit for patch-based histopathology image classification.
  ☆43Updated 2 years ago
• CSBDeep / CSBDeep
  Image restoration for fluorescence microscopy
  ☆323Updated last month
• CBICA / HistoReg
  Framework for registration of sequential digitized histology slices
  ☆28Updated 3 years ago
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆187Updated last week
• yanglf1121 / NuSeT
  NuSeT: A Deep Learning Tool for Reliably Separating and Analyzing Crowded Cells
  ☆20Updated 5 years ago
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆34Updated 2 years ago
• juglab / HDN
  This repository hosts the code for HDN (associated with the paper https://arxiv.org/pdf/2104.01374.pdf) for pixel and structured noise re…
  ☆35Updated 2 months ago