iteal / wormpose
WormPose: Image synthesis and convolutional networks for pose estimation in C. elegans
☆48Updated last year
Alternatives and similar repositories for wormpose
Users that are interested in wormpose are comparing it to the libraries listed below
Sorting:
- Headless DeepLabCut (no GUI support)☆30Updated 3 years ago
- ☆14Updated 4 years ago
- Scalable Optical Flow-based Image Montaging and Alignment☆72Updated 2 months ago
- A Primer on Motion Capture with Deep Learning:Principles, Pitfalls and Perspectives☆22Updated 3 years ago
- MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification☆21Updated last month
- Repository for WormSwin: Instance segmentation of C. elegans using vision transformer as appeared in Nature Scientific Reports 2023.☆12Updated last year
- Animal Part Tracker☆81Updated this week
- GUI to run DeepLabCut on live video feed☆62Updated 7 months ago
- GUI to compute and explore receptive fields, primarily from calcium imaging recordings☆13Updated 3 years ago
- For developers and people training MARS models☆18Updated last year
- High-throughput real-time tracker for delivery of stimuli and measurement of animal behavior.☆24Updated 3 months ago
- Efficient cell detection in large images using cellfinder in napari☆23Updated last year
- Standalone cellfinder cell detection algorithm☆19Updated last year
- An annotation and instance segmentation-based multiple animal tracking and behavior analysis package.☆47Updated last week
- Matlab pipeline for semi-supervised mouse behavioral classification☆19Updated 2 years ago
- Code implementation of the detection network capable of dealing with many overlapping spline bodies.☆38Updated 8 months ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆114Updated last year
- Markerless pose estimation of user-defined features with deep learning for all animals, including humans☆16Updated 5 years ago
- End-user version of the Mouse Action Recognition System (MARS)☆65Updated last year
- ☆34Updated last year
- Segmentation of anatomical structures in a common coordinate space☆32Updated last week
- Block-wise task scheduling for large nD volumes.☆30Updated last month
- Deep learning for animal action recognition toolbox☆36Updated 10 months ago
- Cell tracker designed for tracking intestinal organoids☆21Updated this week
- AlphaTracker is a computer vision pipeline with the practical and real-time advantages , which requires minimal hardware requirements and…☆69Updated last year
- A modular package to control stimulation and track behaviour☆44Updated 6 months ago
- Omnipose: a high-precision solution for morphology-independent cell segmentation☆112Updated this week
- Napari plugin for working with video files.☆12Updated last week
- SIPEC: the deep-learning Swiss knife for behavioral data analysis☆45Updated 8 months ago
- A minimal package for saving and reading large HDF5-based chunked arrays.☆15Updated 3 years ago