Alternatives and similar repositories for BioREx

Users that are interested in BioREx are comparing it to the libraries listed below

• ncbi / AIONER
  AIONER
  ☆62Updated last year
• ncbi / BioRED
  ☆28Updated 2 years ago
• ncbi-nlp / pubtator-gpt
  ☆32Updated 2 years ago
• chenzxlabhzau / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆26Updated 4 years ago
• bionlplab / bioc
  Data structures and code to read/write BioC XML and Json.
  ☆33Updated 2 years ago
• OntoGene / OGER
  ☆24Updated 5 years ago
• WGLab / Bioformer
  Bioformer: an efficient BERT model for biomedical text mining
  ☆55Updated 2 years ago
• luozhhub / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆27Updated 4 years ago
• greenelab / pubtator
  Retrieve and process PubTator annotations
  ☆44Updated 2 years ago
• ncbi / GNorm2
  ☆26Updated last year
• OntoGene / PyBioC
  Python library for working with BioC files
  ☆13Updated 7 years ago
• gyorilab / gilda
  Grounding of biomedical named entities with contextual disambiguation
  ☆45Updated 3 weeks ago
• chanzuckerberg / ChemDisGene
  Bio relation extraction labeled dataset
  ☆45Updated 3 years ago
• billgreenwald / Pubmed-Batch-Download
  Batch download articles based on PMID (Pubmed ID)
  ☆132Updated 2 years ago
• ncbi / bert_gt
  ☆31Updated last year
• larsjuhljensen / tagger
  ☆24Updated 2 years ago
• biomedicalinformaticsgroup / cadmus
  A full-text article retrieval pipeline for biomedical literature.
  ☆22Updated last month
• 2mh / PyBioC
  Python library for work with BioCreative files
  ☆13Updated 7 years ago
• jakelever / pubrunner
  A framework for keeping biomedical text mining result up-to-date
  ☆42Updated 5 years ago
• ckoenigs / PharMeBINet
  Build PharMeBINet from different sources.
  ☆20Updated last week
• Orphanet / Orphadata_aggregated
  Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases
  ☆53Updated 2 weeks ago
• ncbi / BioConceptVec
  ☆42Updated 5 years ago
• RTXteam / RTX
  Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)
  ☆42Updated this week
• EclipseCN / PhenoBERT
  A combined deep learning tool for automated recognition of human phenotype ontology
  ☆27Updated 3 years ago
• ncbi-nlp / BioC-JSON
  Tool that converts between BioC XML files and BioC JSON files
  ☆18Updated 8 years ago
• ncbi / tmVar3
  ☆21Updated 2 years ago
• Aitslab / EasyNER
  a customzable pipeline for information extraction
  ☆18Updated 7 months ago
• dmis-lab / BERN2
  BERN2: an advanced neural biomedical namedentity recognition and normalization tool
  ☆201Updated last year
• monarch-initiative / talisman
  LLM-based gene function enrichment tool
  ☆14Updated 10 months ago
• biocypher / biochatter-light
  The light frontend for BioChatter, in pure Python
  ☆54Updated 5 months ago