Alternatives and similar repositories for BioREx

Users that are interested in BioREx are comparing it to the libraries listed below

• ncbi / AIONER
  AIONER
  ☆59Updated last year
• ncbi / BioRED
  ☆28Updated 2 years ago
• ncbi-nlp / pubtator-gpt
  ☆29Updated last year
• bionlplab / bioc
  Data structures and code to read/write BioC XML and Json.
  ☆32Updated 2 years ago
• ncbi / bert_gt
  ☆32Updated last year
• chenzxlabhzau / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆26Updated 4 years ago
• WGLab / Bioformer
  Bioformer: an efficient BERT model for biomedical text mining
  ☆55Updated 2 years ago
• billgreenwald / Pubmed-Batch-Download
  Batch download articles based on PMID (Pubmed ID)
  ☆128Updated last year
• gyorilab / gilda
  Grounding of biomedical named entities with contextual disambiguation
  ☆45Updated last month
• luozhhub / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆26Updated 3 years ago
• OntoGene / OGER
  ☆24Updated 4 years ago
• EclipseCN / PhenoBERT
  A combined deep learning tool for automated recognition of human phenotype ontology
  ☆25Updated 2 years ago
• ncbi / GNorm2
  ☆25Updated last year
• larsjuhljensen / tagger
  ☆22Updated 2 years ago
• greenelab / pubtator
  Retrieve and process PubTator annotations
  ☆44Updated 2 years ago
• OntoGene / PyBioC
  Python library for working with BioC files
  ☆13Updated 7 years ago
• ncbi-nlp / BioC-JSON
  Tool that converts between BioC XML files and BioC JSON files
  ☆17Updated 8 years ago
• ncbi / tmVar3
  ☆20Updated 2 years ago
• Orphanet / Orphadata_aggregated
  Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases
  ☆50Updated last month
• RTXteam / RTX-KG2
  Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)
  ☆46Updated last week
• 2mh / PyBioC
  Python library for work with BioCreative files
  ☆13Updated 7 years ago
• suamin / MIL-RBERT
  MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)
  ☆20Updated 2 years ago
• jakelever / pubrunner
  A framework for keeping biomedical text mining result up-to-date
  ☆42Updated 5 years ago
• chanzuckerberg / ChemDisGene
  Bio relation extraction labeled dataset
  ☆45Updated 3 years ago
• dmis-lab / BERN2
  BERN2: an advanced neural biomedical namedentity recognition and normalization tool
  ☆193Updated last year
• AnacletoLAB / RNA-KG
  Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering,…
  ☆24Updated 2 weeks ago
• ncbi-nlp / PhenoTagger
  PhenoTagger
  ☆58Updated last year
• biocypher / biochatter-light
  The light frontend for BioChatter, in pure Python
  ☆54Updated last month
• ckoenigs / PharMeBINet
  Build PharMeBINet from different sources.
  ☆19Updated this week
• biomedicalinformaticsgroup / cadmus
  A full-text article retrieval pipeline for biomedical literature.
  ☆21Updated last week