Aitslab / EasyNERLinks
a customzable pipeline for information extraction
☆18Updated 6 months ago
Alternatives and similar repositories for EasyNER
Users that are interested in EasyNER are comparing it to the libraries listed below
Sorting:
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆201Updated last year
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆41Updated last year
- a module to calculate the MeSH similarity☆27Updated 4 years ago
- Data structures and code to read/write BioC XML and Json.☆33Updated 2 years ago
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.☆136Updated 3 months ago
- Fast, world class biomedical NER☆87Updated 9 months ago
- A Serverless Text Annotation Tool for Corpus Development☆57Updated 9 months ago
- Repository for student projects within biomedical text mining from Lund University☆57Updated 2 years ago
- Grounding of biomedical named entities with contextual disambiguation☆45Updated this week
- ☆70Updated 3 years ago
- AIONER☆62Updated last year
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆48Updated last year
- A Python package to download full article PDFs from OA publications☆51Updated 10 months ago
- Biomedical Entity Linking Benchmark☆14Updated 11 months ago
- Auto-CORPus pipeline developed by a University of Nottingham and Imperial College London collaboration to standardise text and table data…☆22Updated last week
- General tutorials for the setup and use of MedCAT.☆40Updated 6 months ago
- Retrieve and process PubTator annotations☆44Updated 2 years ago
- Biomedical Named Entity Recognition and Normalization of Diseases, Chemicals and Genenetic entity classes through the use of state-of-the…☆122Updated 3 years ago
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆79Updated 3 years ago
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆27Updated 2 years ago
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆32Updated 2 years ago
- ☆27Updated 2 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆85Updated 3 months ago
- all scripts used in gatortron project☆128Updated 2 years ago
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆29Updated 4 years ago
- ☆101Updated 3 years ago
- Python library for working with BioC files☆13Updated 7 years ago
- PMC-Patients: A Large-scale Dataset of Patient Summaries and Relations for Benchmarking Retrieval-based Clinical Decision Support Systems…☆72Updated last year
- Code for MedCPT, a model for zero-shot biomedical information retrieval.☆218Updated last year