Alternatives and similar repositories for EasyNER

Users that are interested in EasyNER are comparing it to the libraries listed below

• bionlplab / bioc
  Data structures and code to read/write BioC XML and Json.
  ☆33Updated 2 years ago
• dmis-lab / BERN2
  BERN2: an advanced neural biomedical namedentity recognition and normalization tool
  ☆201Updated last year
• chenzxlabhzau / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆26Updated 4 years ago
• Aitslab / BioNLP
  Repository for student projects within biomedical text mining from Lund University
  ☆57Updated 2 years ago
• luozhhub / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆27Updated 4 years ago
• ncbi / AIONER
  AIONER
  ☆62Updated last year
• sg-wbi / belb
  Biomedical Entity Linking Benchmark
  ☆14Updated last year
• cthoyt / umls_downloader
  Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically
  ☆41Updated last year
• metapub / metapub
  Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.
  ☆139Updated 3 months ago
• gyorilab / gilda
  Grounding of biomedical named entities with contextual disambiguation
  ☆45Updated 3 weeks ago
• WGLab / Bioformer
  Bioformer: an efficient BERT model for biomedical text mining
  ☆55Updated 2 years ago
• ncbi / BioRED
  ☆28Updated 2 years ago
• LHNCBC / SemRep
  ☆70Updated 3 years ago
• AstraZeneca / KAZU
  Fast, world class biomedical NER
  ☆87Updated 9 months ago
• librairy / bio-ner
  Biomedical Named Entity Recognition and Normalization of Diseases, Chemicals and Genenetic entity classes through the use of state-of-the…
  ☆123Updated 4 years ago
• ddomingof / PubMed2PDF
  A Python package to download full article PDFs from OA publications
  ☆53Updated 11 months ago
• lasigeBioTM / BiOnt
  BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction
  ☆27Updated 2 years ago
• chanzuckerberg / ChemDisGene
  Bio relation extraction labeled dataset
  ☆45Updated 3 years ago
• rcolinp / clinical_informatics_umls
  An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…
  ☆48Updated last year
• usmaann / BioALBERT
  Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT
  ☆29Updated 4 years ago
• ncbi-nlp / pubtator-gpt
  ☆32Updated 2 years ago
• GanjinZero / CODER
  CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]
  ☆79Updated 3 years ago
• pmc-patients / pmc-patients
  PMC-Patients: A Large-scale Dataset of Patient Summaries and Relations for Benchmarking Retrieval-based Clinical Decision Support Systems…
  ☆74Updated 2 years ago
• RTXteam / RTX-KG2
  Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)
  ☆54Updated last week
• greenelab / pubtator
  Retrieve and process PubTator annotations
  ☆44Updated 2 years ago
• OHNLP / MedTator
  A Serverless Text Annotation Tool for Corpus Development
  ☆57Updated 10 months ago
• salrowili / BioM-Transformers
  BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA
  ☆37Updated last year
• acadTags / Rare-disease-identification
  Rare disease identification from free-text clinical notes with ontologies and weak supervision
  ☆32Updated 2 years ago
• CogStack / MedCATtutorials
  General tutorials for the setup and use of MedCAT.
  ☆41Updated 7 months ago
• gmichalo / UmlsBERT
  ☆101Updated 3 years ago