Alternatives and similar repositories for EasyNER:

Users that are interested in EasyNER are comparing it to the libraries listed below

• bionlplab / bioc
  Data structures and code to read/write BioC XML and Json.
  ☆32Updated last year
• gyorilab / gilda
  Grounding of biomedical named entities with contextual disambiguation
  ☆43Updated last month
• Aitslab / BioNLP
  Repository for student projects within biomedical text mining from Lund University
  ☆54Updated last year
• ncbi / AIONER
  AIONER
  ☆54Updated 9 months ago
• RTXteam / RTX-KG2
  Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)
  ☆39Updated this week
• cthoyt / umls_downloader
  Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically
  ☆40Updated last year
• dermatologist / ckblib
  Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J
  ☆16Updated 10 months ago
• greenelab / pubtator
  Retrieve and process PubTator annotations
  ☆44Updated last year
• ncbi / BioConceptVec
  ☆41Updated 5 years ago
• lasigeBioTM / BENT
  Biomedical Term Annotator
  ☆9Updated 2 months ago
• WGLab / Bioformer
  Bioformer: an efficient BERT model for biomedical text mining
  ☆54Updated 2 years ago
• luozhhub / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆25Updated 3 years ago
• salrowili / BioM-Transformers
  BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA
  ☆37Updated last year
• rcolinp / clinical_informatics_umls
  An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…
  ☆43Updated last year
• LHNCBC / SemRep
  ☆67Updated 2 years ago
• OntoGene / OGER
  ☆24Updated 4 years ago
• sg-wbi / belb
  Biomedical Entity Linking Benchmark
  ☆12Updated 4 months ago
• chenzxlabhzau / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆26Updated 4 years ago
• biocypher / project-template
  Template for creating a BioCypher-driven knowledge graph
  ☆12Updated 5 months ago
• ddomingof / PubMed2PDF
  A Python package to download full article PDFs from OA publications
  ☆42Updated 3 months ago
• AstraZeneca / KAZU
  Fast, world class biomedical NER
  ☆86Updated 2 months ago
• suamin / MIL-RBERT
  MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)
  ☆19Updated last year
• OntoGene / PyBioC
  Python library for working with BioC files
  ☆13Updated 7 years ago
• usmaann / BioALBERT
  Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT
  ☆29Updated 3 years ago
• uf-hobi-informatics-lab / NLPreprocessing
  A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization
  ☆31Updated 11 months ago
• acadTags / Rare-disease-identification
  Rare disease identification from free-text clinical notes with ontologies and weak supervision
  ☆29Updated 2 years ago
• qingyu-qc / gpt_bionlp_benchmark
  ☆25Updated last year
• mims-harvard / Clinical-knowledge-embeddings
  Unified Clinical Vocabulary Embeddings for Advancing Precision Medicine
  ☆53Updated this week
• metapub / metapub
  Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.
  ☆116Updated 3 months ago
• I2C9W / fromtexttotables
  Leveraging
  ☆12Updated last year