Aitslab / EasyNER
a customzable pipeline for information extraction
☆11Updated 2 weeks ago
Related projects: ⓘ
- Grounding of biomedical named entities with contextual disambiguation☆38Updated 3 weeks ago
- Data structures and code to read/write BioC XML and Json.☆29Updated last year
- a module to calculate the MeSH similarity☆24Updated 3 years ago
- Bio relation extraction labeled dataset☆41Updated 2 years ago
- Biomedical Entity Linking Benchmark☆9Updated 3 months ago
- AIONER☆40Updated last month
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆33Updated 5 months ago
- Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on …☆67Updated 10 months ago
- Biomedical Term Annotator☆9Updated 2 weeks ago
- Template for creating a BioCypher-driven knowledge graph☆11Updated last month
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆32Updated 6 months ago
- Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.☆90Updated last month
- Retrieve and process PubTator annotations☆43Updated last year
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆27Updated 3 years ago
- ☆14Updated 9 months ago
- Repository for student projects within biomedical text mining from Lund University☆50Updated last year
- a module to calculate the MeSH similarity☆22Updated 2 years ago
- ☆23Updated 3 years ago
- ☆24Updated 8 months ago
- Bioformer: an efficient BERT model for biomedical text mining☆53Updated last year
- Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆38Updated last week
- Build PharMeBINet from different sources.☆12Updated 2 weeks ago
- Software "Disease_ontologies_for_knowledge_graphs" - a knowledge base solution that uses Grakn core and disease ontologies cross-referenc…☆20Updated 3 years ago
- Python library for working with BioC files☆13Updated 6 years ago
- BioDEX: Large-Scale Biomedical Adverse Drug Event Extraction for Real-World Pharmacovigilance.☆42Updated 7 months ago
- BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA☆33Updated 7 months ago
- RENET2: High-Performance Full-text Gene-Disease Relation Extraction with Iterative Training Data Expansion☆27Updated 2 years ago
- ☆41Updated 4 years ago
- A resource of adverse drug effects extracted from FDA structured product labels☆60Updated 3 months ago
- ☆52Updated 3 years ago