Alternatives and similar repositories for EasyNER:

Users that are interested in EasyNER are comparing it to the libraries listed below

• gyorilab / gilda
  Grounding of biomedical named entities with contextual disambiguation
  ☆43Updated this week
• OntoGene / PyBioC
  Python library for working with BioC files
  ☆13Updated 6 years ago
• greenelab / pubtator
  Retrieve and process PubTator annotations
  ☆44Updated last year
• bionlplab / bioc
  Data structures and code to read/write BioC XML and Json.
  ☆31Updated last year
• Aitslab / BioNLP
  Repository for student projects within biomedical text mining from Lund University
  ☆52Updated last year
• chenzxlabhzau / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆26Updated 3 years ago
• suamin / MIL-RBERT
  MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)
  ☆19Updated last year
• luozhhub / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆24Updated 3 years ago
• ncbi / BioConceptVec
  ☆41Updated 5 years ago
• usmaann / BioALBERT
  Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT
  ☆28Updated 3 years ago
• WGLab / Bioformer
  Bioformer: an efficient BERT model for biomedical text mining
  ☆54Updated 2 years ago
• krassowski / easy-entrez
  Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on …
  ☆76Updated last year
• chanzuckerberg / ChemDisGene
  Bio relation extraction labeled dataset
  ☆44Updated 2 years ago
• OntoGene / OGER
  ☆24Updated 4 years ago
• cthoyt / umls_downloader
  Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically
  ☆40Updated 11 months ago
• greenelab / snorkeling
  Extracting biomedical relationships from literature with Snorkel 🏊
  ☆58Updated 4 years ago
• lasigeBioTM / BENT
  Biomedical Term Annotator
  ☆9Updated last month
• LHNCBC / SemRep
  ☆66Updated 2 years ago
• biocypher / project-template
  Template for creating a BioCypher-driven knowledge graph
  ☆12Updated 3 months ago
• SmartDataAnalytics / BioKEEN
  A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…
  ☆45Updated 2 years ago
• salrowili / BioM-Transformers
  BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA
  ☆35Updated last year
• acadTags / Rare-disease-identification
  Rare disease identification from free-text clinical notes with ontologies and weak supervision
  ☆28Updated last year
• sg-wbi / belb
  Biomedical Entity Linking Benchmark
  ☆11Updated 3 months ago
• lasigeBioTM / PGR
  A Silver Standard Corpus of Human Phenotype-Gene Relations
  ☆13Updated 2 years ago
• lasigeBioTM / BiOnt
  BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction
  ☆26Updated last year
• ckoenigs / PharMeBINet
  Build PharMeBINet from different sources.
  ☆15Updated 3 weeks ago
• typedb-osi / typedb-bio
  TypeDB Bio: Biomedical Knowledge Graph
  ☆84Updated 9 months ago
• dermatologist / ckblib
  Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J
  ☆16Updated 8 months ago
• mims-harvard / Clinical-knowledge-embeddings
  Unified Clinical Vocabulary Embeddings for Advancing Precision Medicine
  ☆51Updated 3 months ago
• metapub / metapub
  Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.
  ☆112Updated 2 months ago