ncbi-nlp / PhenoTagger
PhenoTagger
☆54Updated 10 months ago
Related projects ⓘ
Alternatives and complementary repositories for PhenoTagger
- ☆19Updated last week
- A combined deep learning tool for automated recognition of human phenotype ontology☆20Updated last year
- ☆23Updated 3 years ago
- Identification of Human Phenotype Entities☆10Updated 6 years ago
- Grounding of biomedical named entities with contextual disambiguation☆39Updated 3 weeks ago
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆84Updated last year
- AIONER☆44Updated 4 months ago
- Retrieve and process PubTator annotations☆43Updated last year
- A full-text article retrieval pipeline for biomedical literature.☆20Updated 2 weeks ago
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub☆32Updated 8 months ago
- Repository for the GA4GH phenopacket schema☆79Updated 2 months ago
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.☆76Updated 3 weeks ago
- Python library for extracting HPO encoded phenotypes from text☆27Updated 7 months ago
- Data structures and code to read/write BioC XML and Json.☆31Updated last year
- A framework for keeping biomedical text mining result up-to-date☆41Updated 4 years ago
- An app and library for building, conversion, and validation of GA4GH Phenopackets.☆13Updated last year
- Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases☆45Updated 3 months ago
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆50Updated 2 weeks ago
- ☆21Updated last year
- RENET2: High-Performance Full-text Gene-Disease Relation Extraction with Iterative Training Data Expansion☆28Updated 2 years ago
- Python library for work with BioCreative files☆12Updated 6 years ago
- ☆32Updated last year
- Public release of the DeepPhe analytic software☆30Updated last year
- Github repo for the Experimental Factor Ontology (EFO)☆57Updated this week
- Python Phenopacket Tools☆11Updated 3 weeks ago
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆168Updated 6 months ago
- ☆15Updated last year
- ☆19Updated 11 months ago
- Repo to organise the mouse-human phenotype mapping initiative and reconcile resources.☆13Updated 7 months ago
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆23Updated 3 months ago