ncbi-nlp / PhenoTagger
PhenoTagger
☆56Updated last year
Alternatives and similar repositories for PhenoTagger:
Users that are interested in PhenoTagger are comparing it to the libraries listed below
- ☆21Updated last month
- A combined deep learning tool for automated recognition of human phenotype ontology☆24Updated 2 years ago
- ☆24Updated 4 years ago
- ☆17Updated last year
- Python library for extracting HPO encoded phenotypes from text☆29Updated last year
- ☆32Updated 4 months ago
- Identification of Human Phenotype Entities☆11Updated 6 years ago
- Repository for the GA4GH phenopacket schema☆85Updated 7 months ago
- A full-text article retrieval pipeline for biomedical literature.☆20Updated 2 months ago
- Grounding of biomedical named entities with contextual disambiguation☆43Updated last month
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆87Updated last year
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.☆79Updated 3 weeks ago
- Collections of GA4GH phenopackets that represent individuals with Mendelian diseases.☆24Updated 2 months ago
- Retrieve and process PubTator annotations☆44Updated last year
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub☆32Updated last year
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆24Updated 8 months ago
- An app and library for building, conversion, and validation of GA4GH Phenopackets.☆13Updated last week
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆53Updated 2 weeks ago
- A framework for keeping biomedical text mining result up-to-date☆42Updated 4 years ago
- A Python library to work with, analyze, filter and inspect the Human Phenotype Ontology☆27Updated 2 months ago
- Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases☆48Updated 5 months ago
- Github repo for the Experimental Factor Ontology (EFO)☆57Updated last week
- Associations of genomic features, drugs and diseases☆48Updated 2 years ago
- Data structures and code to read/write BioC XML and Json.☆32Updated last year
- AIONER☆54Updated 9 months ago
- ☆14Updated 5 years ago
- ☆22Updated 2 years ago
- loinc2hpo Annotation Data☆24Updated 2 years ago
- Python library for work with BioCreative files☆13Updated 7 years ago
- Public release of the DeepPhe analytic software☆30Updated 2 years ago