Alternatives and similar repositories for PhenoTagger

Users that are interested in PhenoTagger are comparing it to the libraries listed below

• EclipseCN / PhenoBERT
  A combined deep learning tool for automated recognition of human phenotype ontology
  ☆25Updated 2 years ago
• WGLab / PhenoGPT
  ☆25Updated 5 months ago
• biomedicalinformaticsgroup / cadmus
  A full-text article retrieval pipeline for biomedical literature.
  ☆21Updated this week
• phenopackets / phenopacket-schema
  Repository for the GA4GH phenopacket schema
  ☆88Updated 2 weeks ago
• ncbi / tmVar3
  ☆20Updated 2 years ago
• obophenotype / upheno
  The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.
  ☆79Updated last week
• lasigeBioTM / IHP
  Identification of Human Phenotype Entities
  ☆11Updated 6 years ago
• anergictcell / pyhpo
  A Python library to work with, analyze, filter and inspect the Human Phenotype Ontology
  ☆28Updated 5 months ago
• callahantiff / OMOP2OBO
  OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies
  ☆89Updated last year
• bionlplab / bioc
  Data structures and code to read/write BioC XML and Json.
  ☆32Updated 2 years ago
• OntoGene / OGER
  ☆24Updated 4 years ago
• monarch-initiative / phenopacket-store
  Collections of GA4GH phenopackets that represent individuals with Mendelian diseases.
  ☆24Updated 3 weeks ago
• obophenotype / human-phenotype-ontology
  Ontology for the description of human clinical features
  ☆318Updated this week
• stormliucong / doc2hpo
  ☆32Updated 7 months ago
• callahantiff / PheKnowLator
  PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models
  ☆194Updated last year
• biopragmatics / biomappings
  🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…
  ☆57Updated last month
• Knowledge-Graph-Hub / kg-obo
  A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub
  ☆32Updated last year
• sujunhao / RENET2
  RENET2: High-Performance Full-text Gene-Disease Relation Extraction with Iterative Training Data Expansion
  ☆29Updated 3 years ago
• TheJacksonLaboratory / loinc2hpoAnnotation
  loinc2hpo Annotation Data
  ☆24Updated 3 years ago
• ncbi / AIONER
  AIONER
  ☆59Updated last year
• Orphanet / Orphadata_aggregated
  Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases
  ☆50Updated last month
• DeepPhe / DeepPhe-Release
  Public release of the DeepPhe analytic software
  ☆30Updated last week
• monarch-initiative / mondo
  Mondo Disease Ontology
  ☆264Updated this week
• OntoGene / PyBioC
  Python library for working with BioC files
  ☆13Updated 7 years ago
• ncbi-nlp / BioC-JSON
  Tool that converts between BioC XML files and BioC JSON files
  ☆17Updated 8 years ago
• EBISPOT / efo
  Github repo for the Experimental Factor Ontology (EFO)
  ☆58Updated this week
• jakelever / pubrunner
  A framework for keeping biomedical text mining result up-to-date
  ☆42Updated 5 years ago
• ncbi / BioRED
  ☆28Updated 2 years ago
• phenopackets / phenopacket-tools
  An app and library for building, conversion, and validation of GA4GH Phenopackets.
  ☆16Updated last month
• greenelab / pubtator
  Retrieve and process PubTator annotations
  ☆44Updated 2 years ago