Lee-CBG / ATM-TCR
β9Updated 5 months ago
Related projects: β
- π [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potentialβ13Updated last month
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding predictionβ29Updated 2 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR bindingβ32Updated 2 years ago
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopesβ14Updated last year
- Absolve antibody variable domain sequence analysisβ16Updated 6 years ago
- HLA-II ligand predictor.β34Updated last year
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint Tβ¦β25Updated 4 months ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TCβ¦β22Updated last year
- A visualization software for antibody multi sequence alignmentβ15Updated 3 months ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2β¦β27Updated last year
- Functional Embedding of Gene Signaturesβ31Updated 6 months ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.β18Updated 4 years ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigenβ76Updated 2 years ago
- ExplaiNN: interpretable and transparent neural networks for genomicsβ40Updated last year
- β19Updated last year
- ProNA2020: System predicting protein-DNA, protein-RNA and protein-protein binding sites from sequenceβ14Updated 4 years ago
- python tools for TCR:peptide-MHC modeling and analysisβ65Updated 5 months ago
- β38Updated 9 months ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"β10Updated 3 years ago
- Large language modeling applied to T-cell receptor (TCR) sequences.β47Updated 2 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunityβ59Updated last year
- flexible CDR based distance metricsβ53Updated last month
- Knowledge-primed neural networksβ34Updated last year
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicityβ45Updated 4 months ago
- A Deep Learning based Efficacy Prediction System for drug discoveryβ60Updated last year
- β15Updated 5 months ago
- PRedictor of IMmunogenic Epitopesβ16Updated 4 months ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequencβ¦β26Updated last year
- identification of immunogenic neoepitopesβ11Updated last year
- β13Updated 2 weeks ago