LinearFold / LinearTurboFoldLinks
An end-to-end linear-time algorithm for structural alignment and conserved structure prediction of RNA homologs
☆11Updated last year
Alternatives and similar repositories for LinearTurboFold
Users that are interested in LinearTurboFold are comparing it to the libraries listed below
Sorting:
- ViennaRNA Package consists of a C code library for the prediction and comparison of RNA secondary structures☆14Updated 3 years ago
- Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities☆30Updated last year
- The standalone version of SPOT-1D-Single available for public use for research purposes.☆23Updated last year
- predict stability change upon mutation☆28Updated last year
- ☆36Updated 5 months ago
- Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learni…☆31Updated 4 years ago
- OPUS-TASS: A Protein Backbone Torsion Angles and Secondary Structure Predictor Based on Ensemble Neural Networks☆10Updated 4 years ago
- Direct coupling analysis software for protein and RNA sequences☆50Updated last month
- This repository contains the stand-alone tool for MusiteDeep server☆34Updated 4 years ago
- ☆22Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆38Updated 9 months ago
- ☆23Updated 3 years ago
- MEGADOCK on Google Colaboratory☆17Updated last year
- Centroid RNA package☆19Updated 4 years ago
- Graph Network for protein-protein interface including language model features☆32Updated last year
- ☆29Updated 4 years ago
- GraphPart, a data partitioning method for ML on biological sequences☆28Updated last year
- Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.☆21Updated 6 years ago
- Fast and accurate protein structure prediction☆53Updated 5 months ago
- This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"☆17Updated last year
- Fast deep learning methods for large-scale protein-protein interaction screening☆41Updated last month
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 4 years ago
- Template with code & dataset for the "Structural basis for solubility in protein expression systems" challenge at the Copenhagen Bioinfor…☆22Updated 4 years ago
- ☆30Updated last month
- ☆21Updated last year
- ML toolset for creating TED: The Encyclopedia of Domains☆21Updated 3 weeks ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆54Updated 2 months ago
- RNA Multiple Sequence Alignment☆42Updated last year
- Cross-protein transfer learning for variant effect prediction☆20Updated last year