Alternatives and similar repositories for sann:

Users that are interested in sann are comparing it to the libraries listed below

• noporpoise / jelly-hash
  Low memory multithreaded hash table
  ☆24Updated 10 years ago
• ocxtal / rbread
  Header-only, gzread-like reader for gzip, bz2, and xz.
  ☆12Updated 6 years ago
• ekg / mmmulti
  memory mapped multimap, multiset, and implicit interval tree based on an in-place parallel sort
  ☆27Updated 4 years ago
• noporpoise / string_buffer
  libstrbuf: A powerful string library for C
  ☆17Updated 8 years ago
• pmelsted / KmerStream
  Streaming algorithm for computing kmer statistics for massive genomics datasets
  ☆54Updated 5 years ago
• noporpoise / carrays
  Algorithms that work on generic C arrays
  ☆11Updated 8 years ago
• jltsiren / bwt-merge
  A tool for merging large BWTs
  ☆26Updated 4 years ago
• gmarcais / compact_vector
  Bit packed vector of integral values
  ☆27Updated 2 months ago
• attractivechaos / k8
  k8 Javascript shell
  ☆155Updated 7 months ago
• molpopgen / libsequence
  libsequence: a C++ class library for evolutionary genetic analysis
  ☆53Updated 4 years ago
• jts / dbgfm
  FM-index representation of a de Bruijn graph
  ☆27Updated 7 years ago
• kloetzl / libdna
  ♥ Essential Functions for DNA Manipulation
  ☆19Updated 8 months ago
• nicolaprezza / lz-rlbwt
  Run-length compressed BWT with LZ77 sampled suffix array
  ☆10Updated 2 years ago
• rvaser / bioparser
  C++ library for parsing several formats in bioinformatics
  ☆9Updated last year
• attractivechaos / dlist
  Five implementations of double linked lists to demonstrate generic data structures in C
  ☆15Updated 5 years ago
• nh13 / pbgzip
  Parallel Block GZIP
  ☆50Updated 8 years ago
• jltsiren / relative-fm
  Relative data structures based on the BWT
  ☆12Updated 6 years ago
• broadinstitute / gamgee
  A C++14 library for NGS data formats
  ☆40Updated 5 years ago
• bingmann / cobs
  COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
  ☆84Updated last year
• GuillaumeHolley / BlastGraph
  BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…
  ☆12Updated 11 years ago
• splatlab / mantis
  Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index
  ☆81Updated last year
• rantala / string-sorting
  A collection of string sorting algorithms
  ☆55Updated 3 years ago
• vreverdy / bit-algorithms
  An exploratory implementation of bit overloads of the C++ standard algorithms
  ☆18Updated 4 years ago
• czep / mlelr
  A reference implementation of logistic regression in C
  ☆14Updated 10 years ago
• mklarqvist / positional-popcount
  Fast C functions for the computing the positional popcount (pospopcnt).
  ☆53Updated 5 years ago
• vgteam / gssw
  efficient alignment of strings to partially ordered string graphs
  ☆33Updated 3 years ago
• nicolaprezza / BWTIL
  BWT Text Indexing Library: a set of tools to work with BWT-based text indexes
  ☆25Updated 2 years ago
• mklarqvist / libflagstats
  Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.
  ☆15Updated 5 years ago
• attractivechaos / khashl
  Generic hash table library in C
  ☆31Updated 2 weeks ago
• lh3 / rmaxcut
  An experimental tool to find approximate max-cuts in a large graph
  ☆11Updated 3 years ago