Alternatives and similar repositories for k8:

Users that are interested in k8 are comparing it to the libraries listed below

• vgteam / gssw
  efficient alignment of strings to partially ordered string graphs
  ☆33Updated 3 years ago
• pmelsted / KmerStream
  Streaming algorithm for computing kmer statistics for massive genomics datasets
  ☆54Updated 5 years ago
• benedictpaten / sonLib
  Small general purpose library for C and Python with focus on bioinformatics.
  ☆30Updated 2 years ago
• vgteam / xg-old
  succinct labeled graphs with collections and paths
  ☆15Updated 6 years ago
• ekg / fastahack
  utilities for indexing and sequence extraction from FASTA files
  ☆59Updated 3 years ago
• arshajii / ema
  Fast & accurate alignment of barcoded short-reads
  ☆33Updated last year
• cosmo-team / cosmo
  Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.
  ☆51Updated last year
• ocxtal / rbread
  Header-only, gzread-like reader for gzip, bz2, and xz.
  ☆12Updated 6 years ago
• nh13 / pbgzip
  Parallel Block GZIP
  ☆50Updated 8 years ago
• seqan / needle
  A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences
  ☆14Updated this week
• splatlab / squeakr
  Squeakr: An Exact and Approximate k -mer Counting System
  ☆85Updated last month
• vgteam / libhandlegraph
  Library for the Handle Graph abstraction
  ☆23Updated 2 weeks ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• nanoporetech / minimappy
  Python bindings to minimap2
  ☆16Updated 7 years ago
• VGP / vgp-tools
  ☆28Updated last year
• ocxtal / dozeu
  SIMD-parallel BLAST X-drop DP on sequence graphs
  ☆24Updated 10 months ago
• splatlab / debgr
  deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph
  ☆30Updated 4 years ago
• vgteam / GetBlunted
  For bluntifying overlapped GFAs
  ☆13Updated 8 months ago
• mklarqvist / tachyon
  High-level API for storing and querying sequence variant data
  ☆20Updated 5 years ago
• dnbaker / bonsai
  Bonsai: Fast, flexible taxonomic analysis and classification
  ☆70Updated 11 months ago
• mklarqvist / tomahawk
  Fast calculations of linkage-disequilibrium in large-scale human cohorts
  ☆43Updated 5 years ago
• wurmlab / genevalidator
  GeneValidator: Identify problems with predicted genes
  ☆46Updated last year
• mskilab-org / gGnome.js
  ☆26Updated 2 years ago
• zeeev / wham
  Structural variant detection and association testing
  ☆106Updated 2 years ago
• sequencing / EAGLE
  Enhanced Artificial Genome Engine: next generation sequencing reads simulator
  ☆32Updated 4 years ago
• bingmann / cobs
  COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
  ☆84Updated last year
• BilkentCompGen / mrfast
  micro-read Fast Alignment Search Tool
  ☆19Updated 5 years ago
• karel-brinda / ococo
  Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
  ☆47Updated 6 years ago
• edawson / mkmh
  Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.
  ☆24Updated 4 years ago
• viq854 / bwbble
  Read alignment with a multi-genome reference
  ☆22Updated 5 years ago