gpuPairHMM: Ultra-fast GPU-based PairHMM for DNA Variant Calling
☆15Nov 6, 2025Updated 10 months ago
Alternatives and similar repositories for gpuPairHMM
Users that are interested in gpuPairHMM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆42Apr 30, 2025Updated last year
- CUDASW++4.0: Ultra-fast GPU-based Smith-Waterman Protein Sequence Database Search☆46Dec 10, 2025Updated 9 months ago
- ☆42Jan 14, 2026Updated 8 months ago
- A minimap2 implementation with binseq inputs☆18Dec 11, 2025Updated 9 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.☆30Sep 23, 2022Updated 3 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 4 years ago
- CARE: Context-Aware Read Error correction for Illumina reads☆21Nov 1, 2023Updated 2 years ago
- a python package for finding tandem repeats from genomic sequences☆39Jun 11, 2026Updated 3 months ago
- BWA-MEM program accelerated with the GPUSeed and GASAL2 libraries☆18Dec 16, 2022Updated 3 years ago
- an example of building up a targets analysis for -omics data☆12Jun 23, 2023Updated 3 years ago
- Efficient base quality score recalibrator for NGS data☆24Nov 28, 2015Updated 10 years ago
- Optimization of a Haplotype PairHMM class for GPU processing☆26Jan 31, 2017Updated 9 years ago
- snakemake grammar for tree-sitter, based on tree-sitter-python☆12May 12, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- C implementation of the Landau-Vishkin algorithm☆36Apr 8, 2022Updated 4 years ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆33Updated this week
- SvelteJS + fastapi + docker-compose (with mongodb and material ui support)☆17Jan 26, 2026Updated 7 months ago
- Fast and Optimal Affine-Gap Sequence-to-Graph Alignment☆37Jul 15, 2026Updated 2 months ago
- Compare assembly graph file formats☆16Jul 23, 2015Updated 11 years ago
- ☆20Nov 30, 2023Updated 2 years ago
- ☆17Aug 25, 2025Updated last year
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆19Dec 6, 2023Updated 2 years ago
- ETHZ Heterogeneous Accelerated Compute Cluster.☆43Sep 7, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ProteoStorm: An Ultrafast Metaproteomics Database Search Framework☆11Jul 15, 2023Updated 3 years ago
- efficient alignment of strings to partially ordered string graphs☆33Apr 22, 2026Updated 4 months ago
- 🧛 Deep generative models for TCR sequences 🧛☆17Apr 4, 2022Updated 4 years ago
- ☆19Nov 22, 2022Updated 3 years ago
- Get started with your NVIDIA Arm HPC Developers Kit!☆34Feb 16, 2023Updated 3 years ago
- marimo + pixi starter template☆22Updated this week
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆12Mar 2, 2023Updated 3 years ago
- Structural variant benchmark☆24Mar 4, 2025Updated last year
- Final Project for Parallel Computing at CMU (15-618/15-418)☆10May 13, 2016Updated 10 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Callable Loci... and more☆23Apr 8, 2026Updated 5 months ago
- functional genomic data integration☆10Sep 22, 2019Updated 6 years ago
- ☆11Apr 30, 2020Updated 6 years ago
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆29Updated this week
- Handwritten Digit Recognition Using Neural Network by Python☆11May 10, 2018Updated 8 years ago
- Hummingbird: Efficient Performance Prediction for Executing Genomic Applications in the Cloud: https://doi.org/10.1093/bioinformatics/bta…☆20Jul 19, 2024Updated 2 years ago
- HCC Sample Applications☆13Jan 3, 2017Updated 9 years ago