Alternatives and similar repositories for nvbio:

Users that are interested in nvbio are comparing it to the libraries listed below

• mengyao / Complete-Striped-Smith-Waterman-Library
  ☆305Updated 2 months ago
• IntelLabs / GKL
  Accelerated kernel library for genomics
  ☆105Updated 2 weeks ago
• amplab / snap
  Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
  ☆289Updated last week
• jeffdaily / parasail
  Pairwise Sequence Alignment Library
  ☆247Updated last year
• seqan / seqan
  SeqAn's official repository.
  ☆488Updated 2 months ago
• broadgsa / gatk-protected
  Official code repository for GATK versions 1.0 through 3.7 (full licensed package). For GATK 4 code, see the https://github.com/broadinst…
  ☆143Updated 6 years ago
• BenLangmead / bowtie
  An ultrafast memory-efficient short read aligner
  ☆261Updated 2 years ago
• lh3 / ksw2
  Global alignment and alignment extension
  ☆130Updated last year
• NVIDIA-Genomics-Research / GenomeWorks
  SDK for GPU accelerated genome assembly and analysis
  ☆289Updated 9 months ago
• Intel-HLS / GenomicsDB
  GenomicsDB
  ☆111Updated 2 years ago
• samtools / htslib
  C library for high-throughput sequencing data formats
  ☆830Updated last week
• pmelsted / bifrost
  Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs
  ☆208Updated 10 months ago
• marbl / MashMap
  A fast approximate aligner for long DNA sequences
  ☆279Updated 4 months ago
• PacificBiosciences / FALCON
  FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON…
  ☆204Updated 2 years ago
• citiususc / SparkBWA
  SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…
  ☆69Updated 5 years ago
• pezmaster31 / bamtools
  C++ API & command-line toolkit for working with BAM data
  ☆423Updated 7 months ago
• rvaser / spoa
  SIMD partial order alignment tool/library
  ☆164Updated last year
• DaehwanKimLab / hisat2
  Graph-based alignment (Hierarchical Graph FM index)
  ☆496Updated 3 months ago
• richarddurbin / pbwt
  Implementation of Positional Burrows-Wheeler Transform for genetic data
  ☆104Updated 3 weeks ago
• MauricioCarneiro / PairHMM
  Optimization of a Haplotype PairHMM class for GPU processing
  ☆24Updated 8 years ago
• isovic / graphmap
  GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…
  ☆180Updated 5 years ago
• Illumina / hap.py
  Haplotype VCF comparison tools
  ☆421Updated last year
• ruanjue / wtdbg2
  Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly
  ☆514Updated last year
• maickrau / GraphAligner
  ☆265Updated 2 months ago
• lh3 / wgsim
  Reads simulator
  ☆269Updated 3 years ago
• NVlabs / nvbio-gpl
  NVBIO is a library of reusable components designed to accelerate bioinformatics applications using CUDA.
  ☆59Updated 10 years ago
• nanopore-wgs-consortium / NA12878
  Data and analysis for NA12878 genome on nanopore
  ☆380Updated 2 years ago
• dzerbino / velvet
  Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo sh…
  ☆286Updated 6 years ago
• gmarcais / Jellyfish
  A fast multi-threaded k-mer counter
  ☆487Updated 11 months ago
• lh3 / minimap
  This repo is DEPRECATED. Please use minimap2, the successor of minimap.
  ☆105Updated 7 years ago