Alternatives and similar repositories for nvbio

Users that are interested in nvbio are comparing it to the libraries listed below

• seqan / seqan
  SeqAn's official repository.
  ☆498Updated this week
• mengyao / Complete-Striped-Smith-Waterman-Library
  ☆311Updated last month
• IntelLabs / GKL
  Accelerated kernel library for genomics
  ☆109Updated 6 months ago
• NVIDIA-Genomics-Research / GenomeWorks
  SDK for GPU accelerated genome assembly and analysis
  ☆299Updated last year
• amplab / snap
  Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
  ☆297Updated 4 months ago
• jeffdaily / parasail
  Pairwise Sequence Alignment Library
  ☆272Updated 4 months ago
• NVlabs / nvbio-gpl
  NVBIO is a library of reusable components designed to accelerate bioinformatics applications using CUDA.
  ☆58Updated 11 years ago
• BenLangmead / bowtie
  An ultrafast memory-efficient short read aligner
  ☆265Updated 3 years ago
• MauricioCarneiro / PairHMM
  Optimization of a Haplotype PairHMM class for GPU processing
  ☆24Updated 8 years ago
• nahmedraja / GASAL2
  ☆51Updated 3 years ago
• seqan / seqan3
  The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
  ☆446Updated 3 weeks ago
• noporpoise / seq-align
  Fast, portable C implementations of Needleman-Wunsch and Smith-Waterman sequence alignment
  ☆97Updated 4 years ago
• Intel-HLS / GenomicsDB
  GenomicsDB
  ☆110Updated 3 years ago
• lh3 / ksw2
  Global alignment and alignment extension
  ☆140Updated 2 years ago
• asbschmidt / CUDASW4
  CUDASW++4.0: Ultra-fast GPU-based Smith-Waterman Protein Sequence Database Search
  ☆44Updated last month
• dcjones / quip
  Compressing next-generation sequencing data with extreme prejudice.
  ☆83Updated 3 years ago
• broadgsa / gatk-protected
  Official code repository for GATK versions 1.0 through 3.7 (full licensed package). For GATK 4 code, see the https://github.com/broadinst…
  ☆144Updated 7 years ago
• pmelsted / bifrost
  Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs
  ☆221Updated 2 months ago
• ncbi / ngs
  NGS Language Bindings
  ☆120Updated 2 years ago
• arun-sub / bwa-mem2
  Building upon BWA-MEM2, this repository includes performance improvements to the seeding and mate-rescue steps.
  ☆13Updated 4 years ago
• richarddurbin / pbwt
  Implementation of Positional Burrows-Wheeler Transform for genetic data
  ☆112Updated last month
• pangenome / odgi
  Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs
  ☆228Updated last week
• Martinsos / opal
  SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)
  ☆39Updated last year
• smarco / WFA2-lib
  WFA-lib: Wavefront alignment algorithm library v2
  ☆206Updated 7 months ago
• citiususc / SparkBWA
  SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…
  ☆69Updated 6 years ago
• ocxtal / minialign
  [IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long read…
  ☆125Updated 7 years ago
• beagle-dev / beagle-lib
  general purpose library for evaluating the likelihood of sequence evolution on trees
  ☆141Updated last week
• isovic / graphmap
  GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…
  ☆182Updated 6 years ago
• dzerbino / velvet
  Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo sh…
  ☆293Updated 2 months ago
• rvaser / spoa
  SIMD partial order alignment tool/library
  ☆170Updated 3 months ago