NVBIO is a library of reusable components designed to accelerate bioinformatics applications using CUDA.
☆227Apr 23, 2020Updated 6 years ago
Alternatives and similar repositories for nvbio
Users that are interested in nvbio are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆52Jul 27, 2022Updated 3 years ago
- SeqAn's official repository.☆503Jun 22, 2026Updated last week
- CUDASW++4.0: Ultra-fast GPU-based Smith-Waterman Protein Sequence Database Search☆46Dec 10, 2025Updated 6 months ago
- ☆319Jan 15, 2026Updated 5 months ago
- High-performance error correction for Illumina resequencing data☆75May 31, 2016Updated 10 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Global alignment and alignment extension☆143Jun 27, 2023Updated 3 years ago
- Benchmark on adaptive banded algorithm☆19Feb 26, 2023Updated 3 years ago
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated 2 years ago
- The next version of bwa-mem☆844Oct 15, 2025Updated 8 months ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Jun 16, 2026Updated 2 weeks ago
- Arioc: GPU-accelerated DNA short-read alignment☆70May 20, 2025Updated last year
- Profile HMM-based hybrid error correction algorithm for long reads☆21Aug 15, 2018Updated 7 years ago
- [IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long read…☆124Sep 10, 2018Updated 7 years ago
- Efficient base quality score recalibrator for NGS data☆24Nov 28, 2015Updated 10 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Find all significant local alignments between reads☆140Jul 3, 2024Updated last year
- FM-index representation of a de Bruijn graph☆26Aug 7, 2017Updated 8 years ago
- a string to graph aligner☆41Jul 5, 2016Updated 9 years ago
- A fuzzy Bruijn graph approach to long noisy reads assembly☆39Mar 15, 2017Updated 9 years ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆139Apr 27, 2026Updated 2 months ago
- SDK for GPU accelerated genome assembly and analysis☆300May 3, 2024Updated 2 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Jun 1, 2026Updated 3 weeks ago
- Shouji is fast and accurate pre-alignment filter for banded sequence alignment calculation. Described in the Bioinformatics journal paper…☆19Jun 3, 2019Updated 7 years ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Jun 23, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Read error correction tool for PacBio data☆12Dec 11, 2024Updated last year
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆139Updated this week
- An Oxford Nanopore Basecaller☆70Sep 4, 2021Updated 4 years ago
- SIMD partial order alignment tool/library☆182Sep 21, 2025Updated 9 months ago
- To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be co…☆31Dec 26, 2023Updated 2 years ago
- Request for comments on interchangeable bioinformatics containers☆39Jun 18, 2019Updated 7 years ago
- WFA-lib: Wavefront alignment algorithm library v2☆218Mar 18, 2026Updated 3 months ago
- G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.☆70Oct 20, 2022Updated 3 years ago
- Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data☆299Sep 6, 2025Updated 9 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Assembly Based ReAligner☆75May 24, 2018Updated 8 years ago
- Darwin: A co-processor for long read alignment☆16Apr 5, 2019Updated 7 years ago
- Portable and Flexible DGEMM Library for GPUs (OpenCL, CUDA, CAL) with special support for HPL☆16Apr 5, 2018Updated 8 years ago
- BWA-MEM program accelerated with the GASAL2 library☆19Sep 2, 2019Updated 6 years ago
- Adaptive semi-global banded alignment on string graphs☆66May 4, 2018Updated 8 years ago
- A package for making MuE observation models in Edward2.☆13Jun 10, 2021Updated 5 years ago
- parallelized blat with multi-threads support☆56Jan 23, 2025Updated last year