NVlabs / nvbioLinks
NVBIO is a library of reusable components designed to accelerate bioinformatics applications using CUDA.
☆212Updated 5 years ago
Alternatives and similar repositories for nvbio
Users that are interested in nvbio are comparing it to the libraries listed below
Sorting:
- SDK for GPU accelerated genome assembly and analysis☆291Updated last year
- Accelerated kernel library for genomics☆106Updated last month
- Pairwise Sequence Alignment Library☆255Updated last year
- ☆312Updated 6 months ago
- Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data☆290Updated last month
- SeqAn's official repository.☆489Updated 2 months ago
- Official code repository for GATK versions 1.0 through 3.7 (full licensed package). For GATK 4 code, see the https://github.com/broadinst…☆143Updated 6 years ago
- Global alignment and alignment extension☆132Updated last year
- GenomicsDB☆111Updated 2 years ago
- NVBIO is a library of reusable components designed to accelerate bioinformatics applications using CUDA.☆59Updated 10 years ago
- An ultrafast memory-efficient short read aligner☆261Updated 3 years ago
- WFA-lib: Wavefront alignment algorithm library v2☆185Updated 3 weeks ago
- Efficient base quality score recalibrator for NGS data☆24Updated 9 years ago
- Haplotype VCF comparison tools☆432Updated last year
- C++ API & command-line toolkit for working with BAM data☆424Updated 2 weeks ago
- A fast approximate aligner for long DNA sequences☆282Updated 7 months ago
- SIMD partial order alignment tool/library☆171Updated last year
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆200Updated 3 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆182Updated 5 years ago
- This repo is DEPRECATED. Please use minimap2, the successor of minimap.☆105Updated 7 years ago
- Fast genome and metagenome distance estimation using MinHash☆408Updated last year
- ☆47Updated 2 years ago
- SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…☆69Updated 5 years ago
- Optimization of a Haplotype PairHMM class for GPU processing☆24Updated 8 years ago
- Compressing next-generation sequencing data with extreme prejudice.☆80Updated 3 years ago
- FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON…☆206Updated 3 years ago
- NGS Language Bindings☆119Updated last year
- HMMER: biological sequence analysis using profile HMMs☆365Updated 4 months ago
- Data and analysis for NA12878 genome on nanopore☆392Updated 2 years ago
- Code examples of fast and simple k-mer counters for tutorial purposes☆170Updated 5 years ago