NVlabs / nvbio-gplLinks
NVBIO is a library of reusable components designed to accelerate bioinformatics applications using CUDA.
☆58Updated 11 years ago
Alternatives and similar repositories for nvbio-gpl
Users that are interested in nvbio-gpl are comparing it to the libraries listed below
Sorting:
- NVBIO is a library of reusable components designed to accelerate bioinformatics applications using CUDA.☆220Updated 5 years ago
- Accelerated kernel library for genomics☆108Updated 3 months ago
- Optimization of a Haplotype PairHMM class for GPU processing☆24Updated 8 years ago
- A C++14 library for NGS data formats☆39Updated 6 years ago
- Compressing next-generation sequencing data with extreme prejudice.☆83Updated 3 years ago
- LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.☆29Updated 3 years ago
- Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data☆295Updated last month
- Source code for the Shifted Hamming Distance (SHD) filtering mechanism for sequence alignment. Described in the Bioinformatics journal pa…☆36Updated 5 years ago
- SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…☆69Updated 6 years ago
- ☆68Updated 2 years ago
- reference-guided aligner for next-generation sequencing technologies☆56Updated 9 years ago
- ☆50Updated 3 years ago
- GenomicsDB☆110Updated 2 years ago
- Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: Open Source Repository☆34Updated 11 months ago
- A demo implementation of Succinct de Bruijn Graphs.☆25Updated 12 years ago
- SDK for GPU accelerated genome assembly and analysis☆296Updated last year
- A tool for merging large BWTs☆25Updated 4 years ago
- CUDASW++4.0: Ultra-fast GPU-based Smith-Waterman Protein Sequence Database Search☆40Updated 2 months ago
- SneakySnake is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU arch…☆52Updated 2 years ago
- Smith-Waterman database searches with inter-sequence SIMD parallelisation☆60Updated last year
- Efficient base quality score recalibrator for NGS data☆24Updated 9 years ago
- BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper☆50Updated 3 years ago
- Global alignment and alignment extension☆136Updated 2 years ago
- Official code repository for GATK versions 1.0 through 3.7 (full licensed package). For GATK 4 code, see the https://github.com/broadinst…☆143Updated 7 years ago
- Ray -- Parallel genome assemblies for parallel DNA sequencing☆67Updated 8 years ago
- lightning☆11Updated 9 years ago
- A benchmark suite to study the performance characteristics of genomics applications☆32Updated 11 months ago
- smith-waterman-gotoh alignment algorithm☆17Updated 8 years ago
- Falcon Accelerated Genomics Pipelines☆15Updated 6 years ago
- ☆310Updated last month