NVlabs / nvbio-gplLinks
NVBIO is a library of reusable components designed to accelerate bioinformatics applications using CUDA.
☆58Updated 11 years ago
Alternatives and similar repositories for nvbio-gpl
Users that are interested in nvbio-gpl are comparing it to the libraries listed below
Sorting:
- NVBIO is a library of reusable components designed to accelerate bioinformatics applications using CUDA.☆221Updated 5 years ago
- Optimization of a Haplotype PairHMM class for GPU processing☆24Updated 8 years ago
- Accelerated kernel library for genomics☆109Updated 4 months ago
- Compressing next-generation sequencing data with extreme prejudice.☆83Updated 3 years ago
- A C++14 library for NGS data formats☆39Updated 6 years ago
- Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data☆295Updated 2 months ago
- ☆50Updated 3 years ago
- LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.☆29Updated 3 years ago
- GenomicsDB☆110Updated 2 years ago
- A tool for merging large BWTs☆25Updated 4 years ago
- SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…☆69Updated 6 years ago
- CUDASW++4.0: Ultra-fast GPU-based Smith-Waterman Protein Sequence Database Search☆42Updated 3 months ago
- Global alignment and alignment extension☆138Updated 2 years ago
- SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)☆39Updated last year
- TileDB☆79Updated 2 years ago
- ECP-CANDLE Benchmarks☆58Updated last year
- ☆20Updated 10 years ago
- BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper☆51Updated 3 years ago
- Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: Open Source Repository☆34Updated last year
- ☆45Updated 9 years ago
- Smith-Waterman database searches with inter-sequence SIMD parallelisation☆60Updated 2 years ago
- reference-guided aligner for next-generation sequencing technologies☆57Updated 9 years ago
- libsequence: a C++ class library for evolutionary genetic analysis☆53Updated 5 years ago
- SDK for GPU accelerated genome assembly and analysis☆297Updated last year
- mrsFAST: micro-read substitution-only Fast Alignment Search Tool☆28Updated 5 years ago
- Ray -- Parallel genome assemblies for parallel DNA sequencing☆67Updated 8 years ago
- ☆310Updated 3 weeks ago
- This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka☆37Updated 8 years ago
- NGS Language Bindings☆119Updated last year
- Source code for the Shifted Hamming Distance (SHD) filtering mechanism for sequence alignment. Described in the Bioinformatics journal pa…☆36Updated 5 years ago