NVlabs / nvbio-gplLinks
NVBIO is a library of reusable components designed to accelerate bioinformatics applications using CUDA.
☆59Updated 10 years ago
Alternatives and similar repositories for nvbio-gpl
Users that are interested in nvbio-gpl are comparing it to the libraries listed below
Sorting:
- Accelerated kernel library for genomics☆106Updated 2 months ago
- smith-waterman-gotoh alignment algorithm☆17Updated 7 years ago
- Optimization of a Haplotype PairHMM class for GPU processing☆24Updated 8 years ago
- ☆20Updated 9 years ago
- A C++14 library for NGS data formats☆40Updated 5 years ago
- Source code for the Shifted Hamming Distance (SHD) filtering mechanism for sequence alignment. Described in the Bioinformatics journal pa…☆35Updated 5 years ago
- lightning☆11Updated 9 years ago
- NVBIO is a library of reusable components designed to accelerate bioinformatics applications using CUDA.☆214Updated 5 years ago
- deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph☆30Updated 4 years ago
- LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.☆29Updated 2 years ago
- Compressing next-generation sequencing data with extreme prejudice.☆81Updated 3 years ago
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Updated 5 years ago
- A tool for merging large BWTs☆26Updated 4 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆17Updated 4 years ago
- Efficient base quality score recalibrator for NGS data☆24Updated 9 years ago
- SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…☆69Updated 5 years ago
- Building upon BWA-MEM2, this repository includes performance improvements to the seeding and mate-rescue steps.☆13Updated 3 years ago
- Smith-Waterman database searches with inter-sequence SIMD parallelisation☆59Updated last year
- BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper☆49Updated 3 years ago
- Reference implementation of the DRMAAv2 C Language Binding☆24Updated 12 years ago
- FM-index representation of a de Bruijn graph☆27Updated 7 years ago
- Generic pipeline system☆23Updated 6 years ago
- SneakySnake is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU arch…☆52Updated 2 years ago
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…☆23Updated 7 months ago
- Global alignment and alignment extension☆132Updated 2 years ago
- Ray -- Parallel genome assemblies for parallel DNA sequencing☆66Updated 7 years ago
- Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: Open Source Repository☆34Updated 7 months ago
- A demo implementation of Succinct de Bruijn Graphs.☆25Updated 11 years ago
- Library for the Handle Graph abstraction☆23Updated 2 weeks ago
- GenomicsDB☆111Updated 2 years ago