NVBIO is a library of reusable components designed to accelerate bioinformatics applications using CUDA.
☆58Aug 21, 2014Updated 11 years ago
Alternatives and similar repositories for nvbio-gpl
Users that are interested in nvbio-gpl are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- NVBIO is a library of reusable components designed to accelerate bioinformatics applications using CUDA.☆227Apr 23, 2020Updated 6 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 9 years ago
- Utilities to read/write FASTA format files in Julia☆16Aug 30, 2024Updated last year
- Command Line Interface for Genomes on a Tree.☆14Mar 15, 2026Updated 2 months ago
- SMASH is a hardware-software cooperative mechanism that enables highly-efficient indexing and storage of sparse matrices. The key idea of…☆18May 17, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Phylogenetic Likelihood Library☆29Dec 3, 2020Updated 5 years ago
- UCSC Genome Browser Docker Image☆17May 12, 2022Updated 4 years ago
- Simulator for structural variants in various types of next-generation sequencing data☆11Mar 21, 2017Updated 9 years ago
- A C++14 library for NGS data formats☆39Aug 5, 2019Updated 6 years ago
- A framework for pipelined computing on GPU☆30Jul 17, 2019Updated 6 years ago
- Compare assembly graph file formats☆16Jul 23, 2015Updated 10 years ago
- Code for the image processing and analysis described our Nature Protocols paper.☆10Jun 26, 2015Updated 10 years ago
- eXokernel Development Kit for Linux☆14Jan 6, 2017Updated 9 years ago
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 12 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Kasahara lab. public repository.☆14Nov 28, 2025Updated 5 months ago
- ☆10Feb 21, 2020Updated 6 years ago
- This repo is deprecated. Please use gfatools instead.☆15Aug 17, 2018Updated 7 years ago
- Calculates the probability of a haplotype given a population reference panel☆12Dec 9, 2024Updated last year
- CASLab-GPU simulator in SystemC☆11May 29, 2020Updated 5 years ago
- coffeescript based hardware description language☆14Jan 14, 2022Updated 4 years ago
- IPMACC is a framework for translating OpenACC for C API to CUDA, OpenCL, and Intel ISPC.☆15Apr 21, 2026Updated 3 weeks ago
- A kernel module to enable RDMA transfers to/from IO, PFN and DAX mapped memory☆10Jun 23, 2015Updated 10 years ago
- A concise ADIOS2 tutorial enabling a full in-situ visualization workflow☆11Jul 31, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Sphinx-based documentation for the Open Microscopy Environment☆24Apr 30, 2026Updated 3 weeks ago
- A prototyping environment that runs an emulated NVMe device☆13Oct 6, 2017Updated 8 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Apr 19, 2022Updated 4 years ago
- Dynamic weighted sampling with replacement☆14Mar 19, 2016Updated 10 years ago
- ☆13Jan 1, 2019Updated 7 years ago
- ☆10Jan 18, 2023Updated 3 years ago
- An LLVM backend for my custom 32-bit RISC CPU https://scholarworks.rit.edu/theses/9550/☆14Aug 16, 2017Updated 8 years ago
- Data Accelerator: Creates a burst buffer from generic hardware and integrates it with Slurm https://www.hpc.cam.ac.uk/research/data-acc h…☆18Mar 30, 2023Updated 3 years ago
- A Python port of Tim Pettersen's git guilt☆16Nov 16, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆12May 3, 2020Updated 6 years ago
- lightning☆11Oct 20, 2015Updated 10 years ago
- ☆12Sep 11, 2025Updated 8 months ago
- Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI☆50Jun 20, 2020Updated 5 years ago
- Implementation of Positional Burrows-Wheeler Transform for genetic data☆116Nov 20, 2025Updated 6 months ago
- Efficient Scientific Computing in Julia -- Workshop OIST 2019☆10Jul 19, 2019Updated 6 years ago
- A platform to evaluate techniques used in multicore graph processing.☆37Oct 25, 2018Updated 7 years ago