Alternatives and similar repositories for pyPaSWAS

Users that are interested in pyPaSWAS are comparing it to the libraries listed below

• kundajelab / training_camp
  Genetics training camp
  ☆21Updated 4 years ago
• pnnl / mercat
  MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data
  ☆18Updated 2 years ago
• kundajelab / dfim
  Deep Feature Interaction Maps (DFIM)
  ☆53Updated 6 years ago
• gagneurlab / concise
  Concise: Keras extension for regulatory genomics
  ☆35Updated 2 years ago
• brentp / fishers_exact_test
  Fishers Exact Test for Python (Cython)
  ☆66Updated 4 months ago
• jambler24 / GenGraph
  A repository for the GenGraph toolkit for the creation and manipulation of graph genomes
  ☆51Updated 3 years ago
• Oshlack / Clinker
  Gene Fusion Visualiser
  ☆51Updated 2 years ago
• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆43Updated 5 years ago
• PacificBiosciences / pbcore
  A Python library for reading and writing PacBio® data files
  ☆39Updated 5 months ago
• NeuroCSUT / ViraMiner
  CNN based classifier for detecting viral sequences among metagenomic contigs
  ☆33Updated 4 years ago
• ueser / FIDDLE
  Flexible Integration of Data with Deep LEarning
  ☆50Updated 2 years ago
• refresh-bio / SPLASH
  ☆79Updated last month
• lh3 / asub
  A unified array job submitter for LSF, SGE/UGE and Slurm
  ☆32Updated 9 months ago
• eturro / mmseq
  Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads
  ☆68Updated last year
• openvax / varcode
  Library for manipulating genomic variants and predicting their effects
  ☆84Updated last year
• neherlab / ffpopsim
  FFPopSim is a collection of C++ classes and a Python interface for efficient simulation of large populations, in particular when the prod…
  ☆14Updated 2 months ago
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated 2 months ago
• boutroslab / cld
  A software for the multispecies design of CRISPR/Cas9 libraries
  ☆36Updated 2 years ago
• maximilianh / crisporPaper
  Code for the CRISPOR article, all data and code to create figures and analysis
  ☆40Updated 8 years ago
• gatk-workflows / gatk4-jupyter-notebook-tutorials
  This repository contains Jupyter Notebooks containing GATK Best Practices Workflows
  ☆26Updated 5 years ago
• brentp / align
  sequence alignment. global, local, glocal.
  ☆41Updated 8 years ago
• 10XGenomics / rust-pseudoaligner
  Single-Cell RNA-seq pseudo-aligner
  ☆51Updated last year
• GuipengLi / SharePathway
  a python package for KEGG pathway enrichment analysis with multiple gene lists.
  ☆36Updated 7 years ago
• jpritt / boiler
  Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments
  ☆13Updated 9 years ago
• kundajelab / ENCODE_downloader
  Downloader for ENCODE
  ☆32Updated 4 years ago
• BenLangmead / bowtie-majref
  Scripts related to building major-allele references for Bowtie and Bowtie 2
  ☆13Updated 4 years ago
• RWilton / Arioc
  Arioc: GPU-accelerated DNA short-read alignment
  ☆70Updated 2 months ago
• liguowang / cpgtools
  Python package to analyze DNA methylation data
  ☆43Updated 8 months ago
• rvolden / C3POa
  Computational pipeline for calling consensi on R2C2 nanopore data
  ☆31Updated 3 years ago
• aquaskyline / Skyhawk
  An Artificial Neural Network-based discriminator for validating clinically significant genomic variants
  ☆35Updated last year