Program for DNA/RNA/protein sequence alignment, read mapping and trimming. Extended python version of PaSWAS, supporting OpenCL and CUDA devices.
☆30Jun 20, 2023Updated 2 years ago
Alternatives and similar repositories for pyPaSWAS
Users that are interested in pyPaSWAS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 8 years ago
- Quality control on genetic variants from next-generation sequencing data using random forest☆20May 26, 2022Updated 3 years ago
- Streaming fragment assignment and quantification for high-throughput sequencing.☆38Nov 14, 2019Updated 6 years ago
- Deep Learning Library for R☆12May 6, 2018Updated 7 years ago
- Freelance bioinformaticians directory☆10Feb 10, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆19Nov 8, 2022Updated 3 years ago
- The website for bioboxes☆11Jun 9, 2017Updated 8 years ago
- fragbuilder is a tool to create, setup and analyze QM calculations on peptides.☆15Oct 31, 2014Updated 11 years ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Jul 7, 2017Updated 8 years ago
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 2 years ago
- A sequence alignment tool☆15Oct 29, 2016Updated 9 years ago
- GOMAP-Singularity is the containerized version of GOMAP☆11Jul 16, 2023Updated 2 years ago
- Port of libraries or functionalities from other languages to JavaScript☆14Apr 29, 2017Updated 8 years ago
- Various scripts and supporting files used in building the Bio-Linux ISO☆11Sep 5, 2017Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- DistMap☆13Nov 23, 2021Updated 4 years ago
- ☆12Feb 21, 2022Updated 4 years ago
- Python Modeling Interface☆14Updated this week
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆17Sep 24, 2020Updated 5 years ago
- A set of metabolomics tools for use in Galaxy☆11Sep 2, 2022Updated 3 years ago
- Train Large Language Models on custom datasets (Tutorials)☆13Sep 22, 2023Updated 2 years ago
- drat repository☆13Dec 17, 2023Updated 2 years ago
- ☆14Sep 19, 2016Updated 9 years ago
- bridges the log crate and indicatif to stop the progress bars and log lines from mixing up☆11Aug 24, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- hot_scan is a free software to detect genomic regions unusually rich (hotspot) in a given pattern via scan statistics☆10Oct 17, 2013Updated 12 years ago
- Reads data files acquired by MALDI-TOF MS on Bruker Daltonics machines of the *flex series☆14Oct 17, 2025Updated 5 months ago
- Ambiente Colaborativo para Comunidades☆23Dec 5, 2016Updated 9 years ago
- Software layer of the EESSI project☆35Apr 8, 2026Updated last week
- Trying to imitate old CRT TVs feel☆10Feb 21, 2022Updated 4 years ago
- Teaching material for the course Fundamentals of Computer Graphics, 1st semester 2018, Sapienza University of Rome☆11Jun 23, 2019Updated 6 years ago
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆19Jun 22, 2023Updated 2 years ago
- 10 Degree of Freedom Inertial Measurement System☆11Sep 20, 2017Updated 8 years ago
- Method used in the study on germline mutation rate estimation in 68 species of vertebrates.☆16Oct 11, 2021Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆13Jun 25, 2016Updated 9 years ago
- RTG Core: Software for alignment and analysis of next-gen sequencing data.☆49May 27, 2025Updated 10 months ago
- A procedural macro that copy-pastes match arms for new type variant enums.☆16Feb 12, 2024Updated 2 years ago
- This repository contains information about ongoing analysis performed by GIAB☆14Aug 30, 2019Updated 6 years ago
- Plot allele frequencies in VCF files☆11Jun 4, 2019Updated 6 years ago
- AYB2 -- All Your Base version 2. A base caller for the Illumina platform☆17Aug 11, 2020Updated 5 years ago
- Variational auto-encoder language model☆14Sep 22, 2016Updated 9 years ago