Alternatives and similar repositories for pyPaSWAS

Users that are interested in pyPaSWAS are comparing it to the libraries listed below

• neherlab / ffpopsim
  FFPopSim is a collection of C++ classes and a Python interface for efficient simulation of large populations, in particular when the prod…
  ☆14Updated 4 months ago
• aquaskyline / Skyhawk
  An Artificial Neural Network-based discriminator for validating clinically significant genomic variants
  ☆35Updated last year
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated 2 months ago
• openvax / vaxrank
  Ranked vaccine peptides for personalized cancer immunotherapy
  ☆58Updated last year
• lh3 / asub
  A unified array job submitter for LSF, SGE/UGE and Slurm
  ☆32Updated 11 months ago
• brentp / align
  sequence alignment. global, local, glocal.
  ☆42Updated 8 years ago
• jpritt / boiler
  Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments
  ☆13Updated 9 years ago
• NVIDIA-Genomics-Research / racon-gpu
  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads
  ☆17Updated 5 years ago
• kundajelab / training_camp
  Genetics training camp
  ☆21Updated 5 years ago
• foerstner-lab / READemption
  A pipeline for the computational evaluation of RNA-Seq data
  ☆39Updated last year
• pnnl / mercat
  MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data
  ☆18Updated 2 years ago
• IntelLabs / Open-Omics-Acceleration-Framework
  Intel lab's open sourced data science framework for accelerating digital biology
  ☆49Updated last week
• jambler24 / GenGraph
  A repository for the GenGraph toolkit for the creation and manipulation of graph genomes
  ☆51Updated 4 years ago
• PacificBiosciences / pbcore
  A Python library for reading and writing PacBio® data files
  ☆41Updated last week
• GuipengLi / SharePathway
  a python package for KEGG pathway enrichment analysis with multiple gene lists.
  ☆36Updated 7 years ago
• quinlan-lab / pathoscore
  pathoscore evaluates variant pathogenicity tools and scores.
  ☆22Updated 3 years ago
• ueser / FIDDLE
  Flexible Integration of Data with Deep LEarning
  ☆50Updated 2 years ago
• rmenegaux / fastDNA
  ☆24Updated 3 years ago
• brentp / fishers_exact_test
  Fishers Exact Test for Python (Cython)
  ☆66Updated 6 months ago
• babelomics / babelomics
  ☆42Updated 7 years ago
• davek44 / utility
  Computational biology utility scripts
  ☆19Updated 5 months ago
• liguowang / cpgtools
  Python package to analyze DNA methylation data
  ☆44Updated 3 weeks ago
• RWilton / Arioc
  Arioc: GPU-accelerated DNA short-read alignment
  ☆70Updated 4 months ago
• kundajelab / dfim
  Deep Feature Interaction Maps (DFIM)
  ☆54Updated 6 years ago
• maximilianh / crisporPaper
  Code for the CRISPOR article, all data and code to create figures and analysis
  ☆44Updated 9 years ago
• BoevaLab / SV-Bay
  Detection of structural variants in cancer mate-pair and paired-end data
  ☆13Updated 6 years ago
• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆42Updated 5 years ago
• ncbi / magicblast
  ☆36Updated 5 months ago
• gagneurlab / concise
  Concise: Keras extension for regulatory genomics
  ☆35Updated 2 years ago
• NVIDIA / VariantWorks
  Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/
  ☆47Updated last month