AnyDSL / anyseq
genome sequence alignment
☆14Updated 5 years ago
Alternatives and similar repositories for anyseq:
Users that are interested in anyseq are comparing it to the libraries listed below
- Tokenizers and Machine Learning Models for biological sequence data☆25Updated 6 months ago
- ☆46Updated 2 years ago
- A fast, AVX2 and ARM Neon accelerated FM index library☆32Updated 4 months ago
- MeShClust: an intelligent tool for clustering DNA sequences☆38Updated 3 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆16Updated 4 years ago
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆43Updated last year
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆34Updated 7 months ago
- ☆58Updated 3 months ago
- G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.☆65Updated 2 years ago
- FMtree: A fast locating algorithm of FM-indexes for genomic data☆18Updated 7 years ago
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆97Updated last month
- Bidirectional WFA (Paper)☆46Updated 11 months ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆57Updated 10 months ago
- Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly☆119Updated last week
- Single-Cell RNA-seq pseudo-aligner☆51Updated 11 months ago
- CARE: Context-Aware Read Error correction for Illumina reads☆20Updated last year
- RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genome…☆55Updated 4 months ago
- Sloika is Oxford Nanopore Technologies' software for training neural network models for base calling☆25Updated 2 years ago
- Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/☆45Updated 2 years ago
- An efficient index for the colored, compacted, de Bruijn graph☆109Updated 6 months ago
- CUDASW++4.0: Ultra-fast GPU-based Smith-Waterman Protein Sequence Database Search☆36Updated 5 months ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆60Updated last month
- AStarix: Fast and Optimal Sequence-to-Graph Aligner☆74Updated 3 years ago
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆14Updated last year
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆41Updated 5 years ago
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 4 years ago
- online notebooks for a review of genome sketching☆61Updated 5 years ago
- ☆77Updated 2 weeks ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆125Updated last year
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆17Updated last year