AnyDSL / anyseqLinks
genome sequence alignment
☆14Updated 5 years ago
Alternatives and similar repositories for anyseq
Users that are interested in anyseq are comparing it to the libraries listed below
Sorting:
- The MASA-CUDAlign extension is used with the MASA architecture to align DNA sequences of unrestricted size with the Smith-Waterman/Needl…☆26Updated 3 years ago
- Tokenizers and Machine Learning Models for biological sequence data☆25Updated 11 months ago
- ☆49Updated 3 years ago
- Building upon BWA-MEM2, this repository includes performance improvements to the seeding and mate-rescue steps.☆13Updated 3 years ago
- Shouji is fast and accurate pre-alignment filter for banded sequence alignment calculation. Described in the Bioinformatics journal paper…☆17Updated 6 years ago
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆43Updated 2 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆17Updated 4 years ago
- SneakySnake is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU arch…☆52Updated 2 years ago
- Smith-Waterman database searches with inter-sequence SIMD parallelisation☆60Updated last year
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆57Updated last year
- Single-Cell RNA-seq pseudo-aligner☆51Updated last year
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆100Updated 2 weeks ago
- Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: Open Source Repository☆34Updated 9 months ago
- Machine learning framework to quantify pathogenicity of structural variants☆12Updated 4 years ago
- G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.☆65Updated 2 years ago
- A fast, AVX2 and ARM Neon accelerated FM index library☆34Updated 8 months ago
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆36Updated 4 months ago
- RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genome…☆57Updated 2 weeks ago
- Scripts related to building major-allele references for Bowtie and Bowtie 2☆13Updated 4 years ago
- Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly☆124Updated this week
- smith-waterman-gotoh alignment algorithm☆17Updated 8 years ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆219Updated last month
- Global alignment and alignment extension☆134Updated 2 years ago
- AStarix: Fast and Optimal Sequence-to-Graph Aligner☆74Updated 3 years ago
- CUDASW++4.0: Ultra-fast GPU-based Smith-Waterman Protein Sequence Database Search☆39Updated 3 weeks ago
- ☆22Updated 2 years ago
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆17Updated 2 years ago
- BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper☆50Updated 3 years ago
- LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.☆29Updated 2 years ago
- A repository for the GenGraph toolkit for the creation and manipulation of graph genomes☆51Updated 3 years ago