NVIDIA-Genomics-Research / GenomeWorksLinks
SDK for GPU accelerated genome assembly and analysis
☆293Updated last year
Alternatives and similar repositories for GenomeWorks
Users that are interested in GenomeWorks are comparing it to the libraries listed below
Sorting:
- DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) …☆241Updated 4 months ago
- A PyTorch Basecaller for Oxford Nanopore Reads☆421Updated last month
- Examples of single-cell genomic analysis accelerated with RAPIDS☆340Updated 2 years ago
- Pairwise Sequence Alignment Library☆263Updated last year
- Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing☆171Updated last year
- Kipoi's model zoo API☆237Updated last year
- A Python package for exploring and analysing genetic variation data☆297Updated last week
- Assemble large genomes using short reads☆322Updated 4 months ago
- Efficient pythonic random access to fasta subsequences☆478Updated 2 months ago
- genes and genomes at your fingertips☆395Updated 2 months ago
- Deep learning infrastructure for genomics☆258Updated 3 years ago
- Graph-based alignment (Hierarchical Graph FM index)☆508Updated 8 months ago
- ☆311Updated last week
- Python and C++ code for reading and writing genomics data.☆791Updated 3 years ago
- awesome-bio-datasets☆233Updated 7 years ago
- Haplotype VCF comparison tools☆438Updated last year
- PEPPER-Margin-DeepVariant☆252Updated last year
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆200Updated 3 years ago
- Data and analysis for NA12878 genome on nanopore☆393Updated 2 years ago
- A curated collection of Nextflow implementation patterns☆365Updated last year
- NVBIO is a library of reusable components designed to accelerate bioinformatics applications using CUDA.☆219Updated 5 years ago
- Model zoo for genomics☆168Updated last year
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆203Updated 4 years ago
- A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.☆315Updated 5 months ago
- ☆317Updated 5 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆274Updated 2 years ago
- Tools for manipulating biological data, particularly multiple sequence alignments☆157Updated last week
- Utilities for building and managing bioconda recipes☆103Updated this week
- Accelerated kernel library for genomics☆107Updated last month
- Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data☆293Updated 2 weeks ago