Alternatives and similar repositories for GenomeWorks

Users that are interested in GenomeWorks are comparing it to the libraries listed below

• google / deepconsensus
  DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) …
  ☆246Updated 7 months ago
• nanoporetech / bonito
  A PyTorch Basecaller for Oxford Nanopore Reads
  ☆424Updated 3 months ago
• Illumina / hap.py
  Haplotype VCF comparison tools
  ☆446Updated last year
• aquaskyline / Clairvoyante
  Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
  ☆173Updated last year
• bcgsc / abyss
  Assemble large genomes using short reads
  ☆322Updated 6 months ago
• NVlabs / nvbio
  NVBIO is a library of reusable components designed to accelerate bioinformatics applications using CUDA.
  ☆220Updated 5 years ago
• NVIDIA-Genomics-Research / rapids-single-cell-examples
  Examples of single-cell genomic analysis accelerated with RAPIDS
  ☆345Updated last month
• mengyao / Complete-Striped-Smith-Waterman-Library
  ☆310Updated last month
• jeffdaily / parasail
  Pairwise Sequence Alignment Library
  ☆264Updated last month
• cggh / scikit-allel
  A Python package for exploring and analysing genetic variation data
  ☆302Updated 2 weeks ago
• DaehwanKimLab / hisat2
  Graph-based alignment (Hierarchical Graph FM index)
  ☆513Updated last month
• nextflow-io / patterns
  A curated collection of Nextflow implementation patterns
  ☆365Updated last year
• mdshw5 / pyfaidx
  Efficient pythonic random access to fasta subsequences
  ☆479Updated last month
• ga4gh / benchmarking-tools
  Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
  ☆205Updated 4 years ago
• OpenGene / awesome-bio-datasets
  awesome-bio-datasets
  ☆237Updated 7 years ago
• smarco / WFA-paper
  Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment
  ☆199Updated 3 years ago
• vanheeringen-lab / genomepy
  genes and genomes at your fingertips
  ☆401Updated 2 weeks ago
• marbl / Mash
  Fast genome and metagenome distance estimation using MinHash
  ☆420Updated 3 weeks ago
• kishwarshafin / pepper
  PEPPER-Margin-DeepVariant
  ☆252Updated last year
• isovic / racon
  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…
  ☆287Updated last year
• Illumina / manta
  Structural variant and indel caller for mapped sequencing data
  ☆443Updated this week
• Illumina / strelka
  Strelka2 germline and somatic small variant caller
  ☆383Updated 3 years ago
• chanzuckerberg / shasta
  [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads
  ☆273Updated 3 years ago
• kipoi / kipoi
  Kipoi's model zoo API
  ☆239Updated last year
• nanopore-wgs-consortium / NA12878
  Data and analysis for NA12878 genome on nanopore
  ☆396Updated 2 years ago
• brentp / cyvcf2
  cython + htslib == fast VCF and BCF processing
  ☆414Updated last week
• google / nucleus
  Python and C++ code for reading and writing genomics data.
  ☆793Updated 3 years ago
• bioconda / bioconda-utils
  Utilities for building and managing bioconda recipes
  ☆103Updated 2 months ago
• luntergroup / octopus
  Bayesian haplotype-based mutation calling
  ☆319Updated 2 weeks ago
• IntelLabs / GKL
  Accelerated kernel library for genomics
  ☆108Updated 3 months ago