Alternatives and similar repositories for scViewer

Users that are interested in scViewer are comparing it to the libraries listed below

• xiebb123456 / AutomaticCellTypeIdentification
  ☆21Updated 3 years ago
• JinmiaoChenLab / ezSingleCell2
  ☆54Updated last year
• scCOVID-19 / COVIDPBMC
  Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection
  ☆40Updated 3 years ago
• UMCUGenetics / primary-met-wgs-comparison
  Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.
  ☆15Updated 2 years ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆25Updated 3 years ago
• Teichlab / celltypist_wiki
  Materials and scripts for building cell type encyclopedia table
  ☆19Updated 4 months ago
• neurorestore / DE-analysis
  ☆37Updated 3 years ago
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆28Updated 2 years ago
• karthikj89 / scgenetics
  identifying disease critical cell types and programs from single cell RNAseq
  ☆54Updated 2 years ago
• quadbio / RNAseq_tutorial
  ☆27Updated 7 months ago
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆41Updated last week
• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆12Updated last year
• Teichlab / cell2tcr
  Inference of TCR motifs
  ☆30Updated 2 weeks ago
• ajitjohnson / imsig
  Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
  ☆27Updated 4 years ago
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆27Updated last year
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆30Updated 10 months ago
• olapuentesantana / easier_manuscript
  ☆15Updated 3 years ago
• JianYang-Lab / MeDuSA
  MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…
  ☆43Updated 2 months ago
• yunshun / HumanBreast10X
  ☆26Updated 3 years ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆42Updated last year
• CICAMS-Liu-lab / ECGEA
  ☆16Updated 4 years ago
• Teichlab / PanGIAtlas
  Integration of gut cell atlases
  ☆24Updated 3 months ago
• ruppinlab / tcga-microbiome-prediction
  Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…
  ☆17Updated 6 months ago
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆26Updated 3 years ago
• UPSUTER / GEMLI
  ☆31Updated 3 months ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 6 months ago
• OscarGVelasco / ClusterFoldSimilarity
  Calculate cluster similarity between clusters from different single cell datasets/batches/samples.
  ☆22Updated 3 weeks ago
• Fraternalilab / sciCSR
  Single-Cell Inference of Class Switch Recombination
  ☆19Updated last month
• McGranahanLab / TcellExTRECT
  ☆47Updated 4 months ago
• RMolania / TCGA_PanCancer_UnwantedVariation
  ☆47Updated last year