Large language models as universal biomedical simulators
☆20Jul 17, 2024Updated 2 years ago
Alternatives and similar repositories for SimulateGPT
Users that are interested in SimulateGPT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MrBiomics: Composable modules and recipes automate bioinformatics for multi-omics analyses☆176Aug 3, 2026Updated 2 months ago
- [NeurIPS 24] Can LLMs Solve Molecule Puzzles? A Multimodal Benchmark for Molecular Structure Elucidation☆21Jan 2, 2026Updated 9 months ago
- Tools and routines to calculate distances between synthesis routes and to cluster them.☆28Feb 11, 2026Updated 8 months ago
- Scripts used in the analysis of C elegans dRNAseq data☆14Apr 7, 2024Updated 2 years ago
- An interactive exploration/visualization platform to help you lift the fog from your CRISPR analyses.☆13Nov 12, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Computational biology utility scripts☆19Apr 16, 2025Updated last year
- Ultimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.☆104Nov 25, 2025Updated 11 months ago
- Shiny app for proteomics data analysis☆14Jul 6, 2021Updated 5 years ago
- A support vector machine for calling variants from next-gen sequencing data☆15Dec 12, 2013Updated 12 years ago
- Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embedding☆14Oct 17, 2023Updated 3 years ago
- ☆12Aug 26, 2023Updated 3 years ago
- Docking Tutorial Using Autodock Vina version 1.2.3 (2021) and AutoDock-GPU Version 1.5.3☆32Aug 27, 2024Updated 2 years ago
- IBM Molecule Generation Experience (MolGX) is a tool to accelerate an AI-driven design of new materials.☆16Oct 26, 2022Updated 4 years ago
- Houses deployable code for the SCORCH scoring function and docking pipeline from the related publication: https://doi.org/10.1016/j.jare.…☆18Nov 29, 2022Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Starling: Set-Valued Deep Research Agent☆14May 6, 2026Updated 5 months ago
- ComBat-ref is a Simple and Highly Effective Batch Effect Correction Method for RNA-seq Count Data☆17Aug 4, 2026Updated 2 months ago
- This is an early version of POREquality, an R Markdown document designed to be ran as part of a Nanopore local basecalling pipeline.☆10Aug 5, 2019Updated 7 years ago
- TrDesign w/ Partial Hallucination support☆10Apr 29, 2022Updated 4 years ago
- generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions.☆16Oct 19, 2019Updated 7 years ago
- Ligand-Receptor docking with AutoDock Vina☆12Mar 21, 2024Updated 2 years ago
- ☆17Jan 10, 2024Updated 2 years ago
- Attempt to bring some of Scimax' functionality to Spacemacs☆13Oct 21, 2019Updated 7 years ago
- R/Shiny package for network-integrated pathway enrichment analysis☆14Dec 2, 2020Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Schema repository for the Alliance of Genome Resources persistent data store☆16Updated this week
- A Snakemake workflow and MrBiomics module for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits …☆60Jan 29, 2026Updated 9 months ago
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆15Aug 25, 2022Updated 4 years ago
- Version II of Mandalorion☆32Feb 1, 2019Updated 7 years ago
- ☆13Oct 29, 2025Updated last year
- ☆12Feb 27, 2024Updated 2 years ago
- Reaction SMILES-AA mapping via language modelling☆30Sep 11, 2024Updated 2 years ago
- Implementation of the paper "Text Detection and Character Recognition in Scene Images with Unsupervised Feature Learning" from Andrew Ng …☆14Apr 17, 2017Updated 9 years ago
- A Snakemake workflow and MrBiomics module for performing and visualizing differential analyses of NGS data powered by the R package limma…☆64Mar 24, 2026Updated 7 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- slidev multi-entry template☆13May 19, 2022Updated 4 years ago
- Pytorch implementation of Pocket2Drug: a generative deep learning model to predict binding drugs for ligand-binding sites.☆22May 19, 2022Updated 4 years ago
- ☆21Oct 23, 2026Updated last week
- GitHub Actions for developing and maintaining Bioconductor packages☆13May 26, 2026Updated 5 months ago
- Cookiecutter template for MCP server development with FastMCP☆12Nov 15, 2025Updated 11 months ago
- XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevi…☆11Jul 25, 2025Updated last year
- A computational platform for type I modular PKS and NRPS design☆13May 8, 2023Updated 3 years ago