chjp / ANILinks
Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes
☆18Updated 3 years ago
Alternatives and similar repositories for ANI
Users that are interested in ANI are comparing it to the libraries listed below
Sorting:
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆48Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆41Updated 4 years ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated last month
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 2 months ago
- ☆20Updated last year
- post processing of bacterial pangenome gene presence/absence matrices☆61Updated 8 months ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆31Updated 6 months ago
- Long read metagenomics practical at EBAME18☆18Updated 7 years ago
- Perform taxonomic profiling analyses for long-read shotgun metagenomic datasets. Developed for the Long Read Sequencing Workshop 2022 at …☆13Updated 3 years ago
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- ☆24Updated 6 years ago
- Gene Absence Presence Identification tool.☆27Updated 7 months ago
- IS mapping software☆56Updated 3 years ago
- Prediction of prophages from bacterial genomes☆81Updated 4 months ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆74Updated 2 years ago
- code repo for mobileOG-db☆40Updated 5 months ago
- Estimate metagenomic coverage and sequence diversity☆56Updated last year
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆51Updated last week
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆32Updated this week
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆70Updated 5 years ago
- Microbial Populations as Clusters Of Gene Transfer☆44Updated last year
- Horizontal gene transfer (HGT) identification pipeline☆63Updated 2 years ago
- all methods related to Enterobase☆43Updated last year
- Reorients assembled microbial sequences☆128Updated 2 months ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆92Updated 2 months ago