chjp / ANI
Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes
☆19Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for ANI
- ☆16Updated 4 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆29Updated last year
- ☆17Updated 2 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆36Updated 3 weeks ago
- A tool for removing redundant genomes from a set of assemblies☆68Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated last month
- Downstream processing of VAMB binning for Viral Elucidation☆46Updated 4 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆24Updated last week
- ☆24Updated 5 years ago
- Automated strain separation of low-complexity metagenomes☆50Updated 2 years ago
- Estimate metagenomic coverage and sequence diversity☆46Updated 3 months ago
- ☆45Updated 6 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆24Updated 2 years ago
- Improvement of metagenome-assembled genomes☆49Updated 4 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 6 months ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- ☆51Updated 3 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆43Updated last year
- IslandPath standalone software☆31Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆39Updated 4 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆21Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆25Updated 2 weeks ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆43Updated 4 years ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆41Updated last year
- whole genome MLST analysis☆38Updated 5 months ago
- Gene Absence Presence Identification tool.☆26Updated last year
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆38Updated last year
- Microbial Populations as Clusters Of Gene Transfer☆42Updated 11 months ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆22Updated 2 weeks ago