chjp / ANI
Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes
☆19Updated 3 years ago
Alternatives and similar repositories for ANI:
Users that are interested in ANI are comparing it to the libraries listed below
- ☆52Updated 3 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆40Updated 6 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 6 months ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- ☆24Updated 6 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated last week
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- reference-based long read assemblies of bacterial genomes☆48Updated 3 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆45Updated 5 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- ☆16Updated 4 years ago
- ☆20Updated 8 months ago
- whole genome MLST analysis☆42Updated last month
- Estimate metagenomic coverage and sequence diversity☆51Updated 9 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆49Updated 10 months ago
- Discover and annotate the virome☆41Updated 3 weeks ago
- Tools to analyze the differences and similarities between CRISPR arrays☆10Updated 4 months ago
- Small utility script to submit genomes to PHASTER for phage detection☆24Updated 3 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆21Updated 2 years ago
- Improvement of metagenome-assembled genomes☆52Updated 5 years ago
- Split Kmer Analysis☆63Updated 2 years ago
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- Perform taxonomic profiling analyses for long-read shotgun metagenomic datasets. Developed for the Long Read Sequencing Workshop 2022 at …☆13Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago