alondmnt / codon-biasView external linksLinks
Python package of codon usage bias analysis tools
☆21Mar 13, 2025Updated 11 months ago
Alternatives and similar repositories for codon-bias
Users that are interested in codon-bias are comparing it to the libraries listed below
Sorting:
- RNA sequence design for a target protein sequence☆13Jan 20, 2026Updated 3 weeks ago
- Codon optimizer for tissue-specific expression☆17Sep 26, 2024Updated last year
- A python project for analysis of codon usage for gene or genome analysis☆25Nov 10, 2024Updated last year
- A PyTorch implementation of "Automatic Identification and Virtual Directed Evolution of Antimicrobial Peptides with Explainable Deep Lear…☆41Aug 1, 2025Updated 6 months ago
- ☆18Dec 5, 2024Updated last year
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆11May 8, 2024Updated last year
- This is for the AI enzyme design course☆13Nov 10, 2025Updated 3 months ago
- HemoPI2: Prediction of hemolytic activity of peptides against mammalian RBCs☆13Feb 10, 2025Updated last year
- Code for improving the performance of sequence-to-expression models for making individual-specific gene expression predictions by fine-tu…☆15Dec 12, 2025Updated 2 months ago
- ☆11Sep 8, 2025Updated 5 months ago
- Identify one or more connected, focally amplified genomic regions to elucidate the architecture of focal amplifications such as ecDNA.☆10Feb 6, 2026Updated last week
- Generating Protein Variants with Different Generative Models (HMM, VAE, ESM-2, ProtGPT2)☆11Mar 14, 2024Updated last year
- Rust coder/decoder for Nucleotide Archival Format (NAF) files.☆10Jan 31, 2025Updated last year
- Code accompanying the paper "Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively…☆12Aug 26, 2021Updated 4 years ago
- JavaScript Sequence Alignment Viewer☆11Mar 25, 2022Updated 3 years ago
- Terminal viewer for pdb files☆18Jan 5, 2026Updated last month
- DeepSoluE☆14Sep 18, 2023Updated 2 years ago
- ☆17Jun 20, 2025Updated 7 months ago
- Generation of OrthoDB protein sets for gene prediction experiments☆11Aug 8, 2024Updated last year
- ☆15May 30, 2025Updated 8 months ago
- ☆11Oct 23, 2025Updated 3 months ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Aug 13, 2024Updated last year
- ☆15Updated this week
- Documentation for PEP specification and all PEPkit software☆10Dec 22, 2025Updated last month
- AntiRef: reference clusters of human antibody sequences☆12Apr 18, 2024Updated last year
- ☆17Jan 2, 2025Updated last year
- Supporting code for our paper "Protein Sequence Modelling with Bayesian Flow Networks"☆50Mar 3, 2025Updated 11 months ago
- Protein language model trained on coding DNA☆53Oct 20, 2024Updated last year
- Code to reproduce Angenent-Mari, N. et al 2020. Deep Learning for RNA Synthetic Biology☆14May 1, 2023Updated 2 years ago
- EnzyMM - Enzyme Motif Miner - Geometric matching of catalytic motifs in protein structures.☆19Dec 16, 2025Updated last month
- ☆16Mar 1, 2025Updated 11 months ago
- repDNA is a Python package to generate various features of DNA sequences incorporating physicochemical properties and sequence-order effe…☆13Jul 16, 2022Updated 3 years ago
- ☆12Dec 10, 2024Updated last year
- Production-ready Next.js template with AI-powered development workflow using 6 specialized agents☆59Jan 17, 2026Updated 3 weeks ago
- Java Image Processing Pipeline (JIPipe) is a graphical batch processing language for the ImageJ ecosystem☆19May 27, 2025Updated 8 months ago
- uorf4u is a bioinformatics tool for conserved upstream ORF annotation.☆13Sep 16, 2025Updated 4 months ago
- An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data☆13Jul 2, 2024Updated last year
- Calculating a range of protein descriptors using their physicochemical, biological and structural properties 🔬.☆16Dec 13, 2023Updated 2 years ago
- Simplified Python SDK for interacting with the Waters Empower Web API☆21Jan 5, 2026Updated last month