dnanexus / dx-toolkit
DNAnexus platform client libraries
☆90Updated last week
Related projects: ⓘ
- ☆81Updated 5 years ago
- miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.☆181Updated 5 years ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆145Updated 5 months ago
- A powerful toolset for genome arithmetic.☆139Updated 3 years ago
- Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.☆141Updated 3 years ago
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆124Updated 5 years ago
- A tool set for short variant discovery in genetic sequence data.☆190Updated 3 years ago
- VCF-kit: Assorted utilities for the variant call format☆121Updated last month
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆106Updated 5 years ago
- Tools for processing and analyzing structural variants.☆147Updated 2 years ago
- Workflows for converting between sequence data formats☆36Updated 3 years ago
- Documentation and description of AWS iGenomes S3 resource.☆106Updated 3 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆84Updated last year
- Software program for checking sample matching for NGS data☆122Updated 3 months ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆92Updated 3 months ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆160Updated 2 months ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆187Updated 3 years ago
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- Bayesian genotyper for structural variants☆125Updated 3 years ago
- Copy number vaiation detection from SNP arrays☆88Updated 4 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆146Updated 3 weeks ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆74Updated 5 months ago
- ABRA2☆90Updated last year
- Platypus Variant Caller☆105Updated 2 months ago
- Scripts, utilities and programs for genomic bioinformatics.☆81Updated 7 months ago
- integrated RNA-seq Analysis Pipeline☆82Updated 5 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆120Updated 9 months ago
- ☆119Updated this week
- SV detection from paired end reads mapping☆113Updated 5 years ago
- Small utilities for working with fastq sequence files.☆114Updated last year