dnanexus / dx-toolkitLinks
DNAnexus platform client libraries
☆96Updated 3 weeks ago
Alternatives and similar repositories for dx-toolkit
Users that are interested in dx-toolkit are comparing it to the libraries listed below
Sorting:
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated 2 years ago
- integrated RNA-seq Analysis Pipeline☆84Updated 6 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆124Updated 6 years ago
- Browser for ExAC consortium data☆106Updated 3 years ago
- ☆62Updated 8 years ago
- UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline☆41Updated 4 years ago
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆126Updated 3 years ago
- Tools for next-generation sequencing analysis☆88Updated 6 years ago
- Copy number vaiation detection from SNP arrays☆93Updated last year
- ☆82Updated 6 years ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆111Updated 6 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆56Updated 5 years ago
- Genome-wide imputation pipeline☆32Updated 11 months ago
- Documentation and description of AWS iGenomes S3 resource.☆114Updated 7 months ago
- Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data☆87Updated 4 years ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- Tumor Heterogeneity Analysis (THetA) and THetA2 are algorithms that estimate the tumor purity and clonal/subclonal copy number aberration…☆72Updated 3 years ago
- MuTect -- Accurate and sensitive cancer mutation detection☆97Updated 2 years ago
- List of tools and resources related to the 10x Genomics GEMCode/Chromium system☆84Updated 6 years ago
- Battenberg algorithm and associated implementation script☆53Updated 4 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆34Updated 8 years ago
- Application for inferring subclonal composition and evolution from whole-genome sequencing data.☆110Updated 2 years ago
- Collection of CGAT NGS Pipelines☆43Updated 6 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 6 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- Transcript quantification import for modular pipelines☆139Updated 2 weeks ago
- ☆68Updated 3 years ago
- Quality of RNA-Seq Toolset☆53Updated 6 years ago
- NGS Language Bindings☆119Updated last year