YosefLab / PopV
☆23Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for PopV
- Multi-resolution Variational Inference☆22Updated last month
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Gene group activity utility functions for Scanpy☆56Updated 3 months ago
- Single cell omics biology annotations☆48Updated 2 months ago
- Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).☆18Updated 3 weeks ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆34Updated 8 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆36Updated 2 months ago
- ☆12Updated 2 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆60Updated last year
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year
- ☆38Updated last month
- AnnData interoperability in R☆58Updated this week
- A set of files to do genomics analysis on python☆18Updated 5 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆60Updated 6 months ago
- Molecular interactions inference from single-cell multi-omics data☆22Updated 2 weeks ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆45Updated 3 weeks ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆56Updated 5 months ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆20Updated 3 years ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆28Updated 6 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆25Updated last month
- Spatial direct messaging detected by bivariate Moran☆24Updated last week
- ☆32Updated 2 months ago
- R implementation of GeneTrajectory☆49Updated 7 months ago
- ☆37Updated 2 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆50Updated 2 weeks ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆58Updated last week
- Code used to benchmark Xenium☆40Updated 4 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆50Updated last month
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆54Updated 7 months ago