OviaLabs / ProteinGPTView external linksLinks
ProteinGPT: Multimodal LLM for Protein Property Prediction and Structure Understanding
☆30Apr 12, 2025Updated 10 months ago
Alternatives and similar repositories for ProteinGPT
Users that are interested in ProteinGPT are comparing it to the libraries listed below
Sorting:
- ☆26Nov 17, 2025Updated 2 months ago
- DyNoPy☆11Sep 5, 2024Updated last year
- ☆53Jun 25, 2025Updated 7 months ago
- Deep reinforcement learning for protein complex modeling☆11May 28, 2022Updated 3 years ago
- Ancestral Sequence Reconstruction in Python☆14May 9, 2019Updated 6 years ago
- Input files and binding free energy values from our benchmark with QuantumBind-RBFE☆16Apr 16, 2025Updated 9 months ago
- Code fo ICLR2025 paper "A Simple yet Effective DDG Predictor is An Unsupervised Antibody Optimizer and Explainer"☆21Jul 18, 2025Updated 6 months ago
- ☆18Jun 13, 2025Updated 8 months ago
- MDPath - A tool for calculating allosteric communication pathways in proteins by analyzing the mutual information of residue dihedral ang…☆26Nov 11, 2025Updated 3 months ago
- Improve the accuracy of database search by using BERT to embed MS/MS reasonably☆19Oct 15, 2024Updated last year
- GRACE: Generative Renaissance in Artificial Computational Enzyme Design☆19Jan 8, 2025Updated last year
- ProtFeat is protein feature extraction tool that utilizes POSSUM and iFeature.☆20Sep 16, 2024Updated last year
- ☆23Jul 14, 2023Updated 2 years ago
- Implementation of the Reference Interaction-Site Model (RISM) equation☆24Mar 26, 2025Updated 10 months ago
- ☆27Feb 12, 2025Updated last year
- Several QM/MM tutorials for biological simulations adapted to CP2K. Tutorials adapted from AMBER, GMX, NAMD and CPMD softwares.☆24Oct 18, 2019Updated 6 years ago
- ☆65Apr 8, 2025Updated 10 months ago
- ☆25Oct 8, 2024Updated last year
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆61May 21, 2025Updated 8 months ago
- [AAAI 2025] CoPRA: Bridging Cross-domain Pretrained Sequence Models with Complex Structures for Protein-RNA Binding Affinity Prediction☆33Dec 23, 2024Updated last year
- Baseline model for PPB-Affinity benchmark data☆34May 21, 2025Updated 8 months ago
- Free Parametrization for Small Molecules☆50Feb 4, 2026Updated last week
- iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequence…☆32May 23, 2022Updated 3 years ago
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆29Dec 21, 2023Updated 2 years ago
- EnzyHTP is a python library that automates the complete life-cycle of enzyme modeling☆31Feb 4, 2026Updated last week
- ☆76Aug 26, 2025Updated 5 months ago
- This pipeline is executing a RE-EDS run for relative free energy calculations. It can be used for example for calculation of hydration fr…☆32Jun 3, 2025Updated 8 months ago
- ☆78Feb 11, 2025Updated last year
- Awesome papers and codes list of small molecule mass spectrometry-related machine learning methods☆36Jan 18, 2026Updated 3 weeks ago
- RNA, mRNA, DNA, Peptide, Protein, Antibody and Complex | Folding☆40Nov 20, 2025Updated 2 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆95Dec 10, 2025Updated 2 months ago
- Synthetic Accessibility via Fragment Assembly Generation☆17Feb 1, 2026Updated last week
- This software package simulates the reduction of graphene oxide and calculates the optical response of the generated sp2 domains☆11Dec 22, 2016Updated 9 years ago
- ☆55Mar 5, 2025Updated 11 months ago
- Adaptive string method implementation in AmberTools23 and Amber22☆14Jan 7, 2025Updated last year
- Lennard-Jones Molecular Dynamics for beginners☆15Sep 20, 2021Updated 4 years ago
- Homomer symmetry prediction from protein sequence☆41Mar 13, 2025Updated 11 months ago
- ☆14Dec 18, 2024Updated last year
- A python script to perform QM/MM calculation.☆13Jan 12, 2026Updated last month