Yatir-Solan / Single-cell-RNA-sequencing-analysis
In order to learn scRNAseq analysis, I decided to reconstruct a Nature paper using Python's Scanpy package. The paper examined lung cells from multiple COVID-19 patients to construct a comprehensive cellular atlas. The project is still ongoing, and I welcome any questions, tips, critiques, or suggestions that could help me enhance my skills.
☆0Updated last year
Alternatives and similar repositories for Single-cell-RNA-sequencing-analysis
Users that are interested in Single-cell-RNA-sequencing-analysis are comparing it to the libraries listed below
Sorting:
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated 2 years ago
- Analysis pipeline for ATAC-seq data☆59Updated last year
- ☆38Updated this week
- My youtube programming scripts☆53Updated 4 months ago
- ☆42Updated 4 years ago
- SciLifeLab SIB Summer School for Advanced topics in Single Cell Omics. Site: https://nbisweden.github.io/single-cell_sib_scilifelab_2021/☆23Updated 3 years ago
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆29Updated 4 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- ☆57Updated 4 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆93Updated 2 years ago
- Immunology-related bioinformatics data and tools☆73Updated last year
- Hands-on training on the latest methodologies and applications for the analysis of nucleic acids from eukaryotic single cells☆16Updated 9 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆68Updated last month
- ☆64Updated last year
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆28Updated last year
- Basic workflow for ATAC-seq analysis☆78Updated last year
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆52Updated 3 years ago
- A single cell transcriptomics pipeline for QC, integration and making the data presentable☆59Updated 2 weeks ago
- Notes on ChIP-seq and other-seq-related tools☆26Updated 4 months ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated last year
- ☆14Updated last year
- ☆27Updated 7 months ago
- R implementation of MULTI-seq sample classification workflow☆62Updated last year
- ☆46Updated 3 years ago
- ☆80Updated last year
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆37Updated last year
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆74Updated 3 weeks ago
- ☆27Updated 6 months ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated 4 months ago