Alternatives and similar repositories for Single-cell-RNA-sequencing-analysis

Users that are interested in Single-cell-RNA-sequencing-analysis are comparing it to the libraries listed below

• liulab-dfci / MAGeCK
  Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…
  ☆29Updated 4 years ago
• liulab-dfci / RIMA_pipeline
  ☆80Updated last year
• bioinfo-ibms-pumc / SCSA
  SCSA: cell type annotation for single-cell RNA-seq data
  ☆90Updated 2 years ago
• FredHutch / Galeano-Nino-Bullman-Intratumoral-Microbiota_2022
  Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022
  ☆37Updated last year
• NBISweden / single-cell_sib_scilifelab_2021
  SciLifeLab SIB Summer School for Advanced topics in Single Cell Omics. Site: https://nbisweden.github.io/single-cell_sib_scilifelab_2021/
  ☆23Updated 3 years ago
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆93Updated 2 years ago
• oxwang / fda_scRNA-seq
  ☆14Updated 5 years ago
• quadbio / scMultiome_analysis_vignette
  Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis
  ☆57Updated last year
• quadbio / RNAseq_tutorial
  ☆27Updated 7 months ago
• cellgeni / STARsolo
  wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq
  ☆57Updated 2 months ago
• crazyhottommy / compbio_tutorials
  My youtube programming scripts
  ☆53Updated 4 months ago
• alexyermanos / Platypus
  R package for the analysis of single-cell immune repertoires
  ☆42Updated 4 months ago
• CebolaLab / ATAC-seq
  Analysis pipeline for ATAC-seq data
  ☆60Updated last year
• PierreBSC / Viral-Track
  ☆57Updated 4 years ago
• hamidghaedi / scRNA_seq-analysis
  scRNA analysis of public dataset on bladder cancer
  ☆16Updated last year
• hukai916 / scATACpipe
  ☆27Updated 7 months ago
• mdozmorov / Cancer_notes
  A continually expanding collection of cancer genomics notes and data
  ☆104Updated last month
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆55Updated 2 years ago
• crazyhottommy / immunotherapy_scRNAseq_papers
  ☆14Updated last year
• ThomasJamesMitchell / deSCeRNAMut
  Method for de novo mutation calling from droplet based single cell RNA seq data
  ☆14Updated 3 years ago
• zktuong / dandelion
  dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data
  ☆114Updated last week
• ncborcherding / utility
  Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR
  ☆86Updated 11 months ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆34Updated 5 years ago
• gexijin / idepGolem
  ☆38Updated last week
• tgac-vumc / BLADE
  BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data
  ☆28Updated last year
• FenyoLab / L1EM
  Estimate locus specific human LINE-1 expression.
  ☆35Updated 2 years ago
• rpolicastro / scProportionTest
  ☆67Updated last year
• mdozmorov / Immuno_notes
  Immunology-related bioinformatics data and tools
  ☆73Updated last year
• lanagarmire / Asgard
  ☆42Updated last year
• scCOVID-19 / COVIDPBMC
  Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection
  ☆40Updated 3 years ago