Python package to infer tensions and pressures from 3D microscopy images of embryos and tissues
☆12Nov 4, 2025Updated 4 months ago
Alternatives and similar repositories for foambryo
Users that are interested in foambryo are comparing it to the libraries listed below
Sorting:
- The computational platform u-signal3D defines a shape-invariant representation of the spatial scales of molecular organization at the cel…☆11Mar 12, 2026Updated last week
- ☆11Feb 10, 2025Updated last year
- Code for producing the analysis in the "Quantifying the tradeoff between sequencing depth and cell number in single-cell RNA-seq" manuscr…☆16Feb 5, 2020Updated 6 years ago
- List of openly available dataset generated by our lab☆13Jan 9, 2026Updated 2 months ago
- ☆22Aug 17, 2023Updated 2 years ago
- ☆10Dec 8, 2023Updated 2 years ago
- This is a Pokemon fan game made in python using pygame.☆26Dec 6, 2025Updated 3 months ago
- ☆15Nov 10, 2025Updated 4 months ago
- This repository contains the scripts for reproducing the results presented in Costa AC, Ahamed T, Jordan D, Stephens GJ (2023) "A Markov…☆11Sep 25, 2025Updated 5 months ago
- Interactive visualization and sharing of cell tracking data in the browser☆46Mar 4, 2026Updated 2 weeks ago
- Code repository for macsGESTALT single cell lineage tracing analysis https://doi.org/10.1101/2020.08.11.245787☆10May 10, 2021Updated 4 years ago
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆21Nov 24, 2025Updated 3 months ago
- ☆12Apr 13, 2020Updated 5 years ago
- Single Cell Biology and Bioinformatics☆24Apr 25, 2025Updated 10 months ago
- Dynamical information enables inference of gene regulation at single-cell scale☆12Jun 9, 2025Updated 9 months ago
- The official QuPath extension for InstanSeg☆29Jan 21, 2026Updated 2 months ago
- Neural Crest Fate Decisions☆11Jul 9, 2019Updated 6 years ago
- Fast, modular and reproducible generation of publication quality scientific figures and movies with only a few lines of code.☆17Apr 9, 2025Updated 11 months ago
- Algorithms for identifying coherent structures in sparse and noisy trajectory datasets☆16Oct 22, 2021Updated 4 years ago
- Landscape dynamic network biomarkers☆14Sep 21, 2017Updated 8 years ago
- A modified version of the level-set-methods-toolbox developed by Ian M. Mitchell☆13Nov 14, 2020Updated 5 years ago
- Publically accessible code for DIISCO method☆12Oct 15, 2025Updated 5 months ago
- XTensions built using Python 3.7 for Imaris software☆12Jan 8, 2026Updated 2 months ago
- A curated list of resources related to structured generation 🔥☆23Jul 25, 2025Updated 7 months ago
- Introduction to Python Programming☆11Mar 31, 2020Updated 5 years ago
- A tool for harvesting media files from Open Access articles for upload into Wikimedia Commons☆25Jul 3, 2016Updated 9 years ago
- Dynamic inference from single-cell snapshots by optimal transport☆20Mar 14, 2024Updated 2 years ago
- VT3D: a versatile Visualization Toolbox for 3D spatial transcriptomics atlas☆14Nov 6, 2024Updated last year
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 4 years ago
- ☆13Sep 29, 2023Updated 2 years ago
- Comprehensive hosts to block Ads, Analytics, Tracking & Telemetry based on Exodus list☆11Oct 31, 2024Updated last year
- General Image Analysis of Nuclei-containing Images☆10Jul 11, 2025Updated 8 months ago
- Software for dynamic spherical harmonic analysis☆10May 1, 2020Updated 5 years ago
- Learning cell fate landscapes from spatial transcriptomics using Fused Gromov-Wasserstein☆25Oct 21, 2025Updated 5 months ago
- Developmental Spatiotemporal Optimal Transport☆13Mar 19, 2025Updated last year
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆20May 22, 2021Updated 4 years ago
- ShapeEmbedLite: a lightweight self-supervised representation learning model for 2D shape analysis☆21Oct 13, 2025Updated 5 months ago
- Export your Google Voice call & text history as JSON☆17Feb 26, 2022Updated 4 years ago
- This jupyter notebook is part of the lecture "Data Science for Raman spectroscopy" imparted by Nicolás Coca-López during the Hands-on Wor…☆13Jan 15, 2023Updated 3 years ago