VirtualEmbryo / foambryoLinks
Python package to infer tensions and pressures from 3D microscopy images of embryos and tissues
☆12Updated 2 weeks ago
Alternatives and similar repositories for foambryo
Users that are interested in foambryo are comparing it to the libraries listed below
Sorting:
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆29Updated 7 months ago
- computer vision models for single-cell phenotyping☆76Updated last week
- A platform for compiling, analyzing, and exploring tracking data☆47Updated 2 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Updated last month
- ☆13Updated 4 years ago
- Interactive visualization and sharing of cell tracking data in the browser☆40Updated 3 weeks ago
- ☆21Updated 6 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 4 months ago
- Analysis of data produced by cvapipe for the variance paper☆23Updated 10 months ago
- ☆39Updated last year
- ☆39Updated this week
- BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.☆129Updated 3 months ago
- 4D reconstruction of developmental trajectories using spherical harmonics☆23Updated 7 months ago
- A plugin to visualise 3D spatial single cell omics☆21Updated 3 weeks ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆78Updated 3 months ago
- Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…☆22Updated last year
- ☆22Updated 2 years ago
- Morphological features from images and masks made easy.☆37Updated 3 weeks ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Updated 9 months ago
- Cell tracking and segmentation software☆156Updated this week
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆60Updated last year
- An Ilastik-like interactive pixel classifier.☆16Updated last year
- Your Personal Assistant in Computational Bioimaging.☆45Updated 7 months ago
- Resources for teaching/preparing to teach bioimage analysis☆58Updated 3 weeks ago
- A napari plugin for clustering objects according to their properties.☆88Updated last week
- Gamified image segmentation quality estimation☆18Updated 6 months ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- The Fluorescent Protein Database☆75Updated this week
- Command-line client for Fractal☆47Updated last week