naity / finetune-esm
Scalable Protein Language Model Finetuning with Distributed Learning and Advanced Training Techniques such as LoRA.
☆19Updated 11 months ago
Alternatives and similar repositories for finetune-esm:
Users that are interested in finetune-esm are comparing it to the libraries listed below
- Efficient implementatin of ESM family.☆54Updated 2 months ago
- Protein language model trained on coding DNA☆46Updated 5 months ago
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆28Updated 7 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆70Updated 2 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆44Updated 4 months ago
- ☆44Updated 5 months ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆28Updated 3 weeks ago
- Learning the language of protein-protein interactions☆58Updated this week
- ☆66Updated 6 months ago
- Various Ideas for Protein Masked LM with ESMFold/ESM-2☆15Updated last year
- Fast deep learning methods for large-scale protein-protein interaction screening☆36Updated 5 months ago
- ☆36Updated 2 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆70Updated 11 months ago
- RNA Multiple Sequence Alignment☆36Updated last year
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆24Updated 8 months ago
- Aligning protein generative models with experimental fitness☆88Updated 5 months ago
- ☆39Updated this week
- ☆34Updated 2 months ago
- Results and data from the pilot round of the Protein Engineering Tournament☆28Updated this week
- Public repository describing training and testing of AntiBERTa.☆58Updated last year
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆50Updated 8 months ago
- ☆64Updated last week
- AlphaBind code + model accompanying pre-print☆49Updated 3 months ago
- Predict the structure of immune receptor proteins☆48Updated 4 months ago
- Code for humanization of antibody and nanobody☆38Updated 4 months ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated last year
- Tool for modelling the CDRs of antibodies☆47Updated 2 years ago
- Contrastive learning harmonizing protein language models and natural language models☆30Updated 9 months ago
- ☆32Updated 7 months ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆35Updated 2 years ago