Scalable Protein Language Model Finetuning with Distributed Learning and Advanced Training Techniques such as LoRA.
☆34Apr 12, 2024Updated last year
Alternatives and similar repositories for finetune-esm
Users that are interested in finetune-esm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Feb 14, 2025Updated last year
- Protein function prediction using protein structures and deep graph neural networks.☆20Jan 24, 2025Updated last year
- ☆21Oct 22, 2024Updated last year
- Protein stability prediction using rewired protein generative models☆69Dec 25, 2025Updated 3 months ago
- A Rust library for calculating the SASA for a protein. 5x faster than Freesasa. Based on the Shrake & Rupley algorithm.☆20Mar 16, 2026Updated 3 weeks ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- GraphPart, a data partitioning method for ML on biological sequences☆35Oct 26, 2023Updated 2 years ago
- ☆15Oct 16, 2023Updated 2 years ago
- DeepSEA implements in PyTorch☆25Jun 5, 2019Updated 6 years ago
- The MULTICOM4 protein structure prediction system developed by the Bioinformatics and Machine Learning Lab at the University of Missouri …☆17Nov 27, 2025Updated 4 months ago
- Machine learning workflows for analyzing high-throughput protein data☆27Nov 22, 2016Updated 9 years ago
- A Beginner's Guide to Machine Learning with Scikit-Learn☆31Feb 15, 2014Updated 12 years ago
- DistilProtBert implementation, a distilled version of ProtBert model.☆16Sep 21, 2022Updated 3 years ago
- Accurate prediction of protein intrinsic disorder and its functions using graph-based interaction protein language model☆24Aug 20, 2024Updated last year
- A model named ATMOL for predicting molecular property☆10May 2, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Steering discrete diffusion models with labeled data for protein fitness optimization☆28Nov 1, 2025Updated 5 months ago
- 整理自己每天汲取到的知识并分享给大家☆13May 26, 2022Updated 3 years ago
- Protein sequence domain annotation with a language model☆29Apr 1, 2026Updated last week
- Bokeh extensions to plot molecules easily☆10Jul 14, 2025Updated 8 months ago
- ☆16Mar 31, 2026Updated last week
- ☆18Dec 5, 2024Updated last year
- Detection of remote homology by comparison of protein language model representations☆61Dec 16, 2024Updated last year
- ProCare: A Point Cloud Registration Approach to Align Protein Cavities☆30Dec 30, 2022Updated 3 years ago
- Wrapper tool for ancestral sequence and indel reconstruction using IQ-TREE☆11Oct 20, 2025Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆125Feb 7, 2026Updated 2 months ago
- 本项目采用Firefly模型训练框架,使用LLAMA-2模型对多项选择阅读理解任务(Multiple Choice MRC)进行微调,取得了显著的进步。☆11Sep 16, 2023Updated 2 years ago
- Systematic Multi-Trait AAV Capsid Engineering for Efficient Gene Delivery (Eid et al., Nature Communications, 2024)☆11Aug 26, 2024Updated last year
- Generating Protein Variants with Different Generative Models (HMM, VAE, ESM-2, ProtGPT2)☆11Mar 14, 2024Updated 2 years ago
- This is for the AI enzyme design course☆15Nov 10, 2025Updated 4 months ago
- A Go library using the Least Recently Used (LRU) strategy for efficient caching☆15Mar 18, 2025Updated last year
- A biological dual-language foundation model☆12Jun 16, 2025Updated 9 months ago
- plot Multiple Sequence Alignment(MSA) of Clustal by python package☆14Mar 14, 2023Updated 3 years ago
- Code for the paper "Enzyme Promiscuity Prediction using hierarchy-informed multi-label classification"☆13Aug 7, 2023Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆13Jun 11, 2024Updated last year
- DeepECtransformer☆29Oct 20, 2023Updated 2 years ago
- ☆14Dec 10, 2018Updated 7 years ago
- Python function that performs a balanced cut-tree of a SciPy linkage matrix☆13Jul 19, 2023Updated 2 years ago
- A tool to compare two CSV files of SMILES strings, find overlapping compounds by InChIKey prefix, and generate an HTML visualization of …☆16Apr 20, 2025Updated 11 months ago
- ☆16Jan 13, 2026Updated 2 months ago
- ☆17Jan 29, 2025Updated last year