Scalable Protein Language Model Finetuning with Distributed Learning and Advanced Training Techniques such as LoRA.
☆34Apr 12, 2024Updated last year
Alternatives and similar repositories for finetune-esm
Users that are interested in finetune-esm are comparing it to the libraries listed below
Sorting:
- The MULTICOM4 protein structure prediction system developed by the Bioinformatics and Machine Learning Lab at the University of Missouri …☆17Nov 27, 2025Updated 3 months ago
- Protein function prediction using protein structures and deep graph neural networks.☆20Jan 24, 2025Updated last year
- ☆16Feb 14, 2025Updated last year
- ☆21Oct 22, 2024Updated last year
- Accurate prediction of protein intrinsic disorder and its functions using graph-based interaction protein language model☆24Aug 20, 2024Updated last year
- RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences☆27Aug 21, 2025Updated 6 months ago
- DeepSEA implements in PyTorch☆25Jun 5, 2019Updated 6 years ago
- Machine learning workflows for analyzing high-throughput protein data☆26Nov 22, 2016Updated 9 years ago
- DeepECtransformer☆29Oct 20, 2023Updated 2 years ago
- Recursion's molecular foundation model☆66Jun 6, 2025Updated 9 months ago
- Protein Sequence Annotation with Language Models☆28Jan 24, 2026Updated last month
- GraphPart, a data partitioning method for ML on biological sequences☆33Oct 26, 2023Updated 2 years ago
- The code for paper "Synthetic Promoter Design in Escherichia coli based on Deep Genera-tive Network"☆29Nov 11, 2019Updated 6 years ago
- ProCare: A Point Cloud Registration Approach to Align Protein Cavities☆30Dec 30, 2022Updated 3 years ago
- ☆34Dec 15, 2023Updated 2 years ago
- Protein stability prediction using rewired protein generative models☆65Dec 25, 2025Updated 2 months ago
- Official implementation of "Learning the language of protein structures"☆41Jun 20, 2025Updated 8 months ago
- ☆18Dec 5, 2024Updated last year
- Machine Learning and Neural Networks☆29May 22, 2023Updated 2 years ago
- ParaAntiProt: Paratope Prediction Using Antibody and Protein Language Models☆10Jul 16, 2024Updated last year
- A model named ATMOL for predicting molecular property☆10May 2, 2022Updated 3 years ago
- A Nextflow pipeline that creates reliable, structure-informed MSAs of thousands of protein sequences which can supplement structural info…☆11Nov 19, 2025Updated 3 months ago
- Learning the language of protein-protein interactions☆137Jan 12, 2026Updated last month
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆93Apr 24, 2024Updated last year
- Exposes a common API in Python for the Macrobobond Web and Client data APIs☆17Updated this week
- Home of the Martini 3 Sterol Parameters☆13Oct 10, 2023Updated 2 years ago
- NEFF Calculator and MSA File Converter☆13Sep 16, 2025Updated 5 months ago
- This is for the AI enzyme design course☆13Nov 10, 2025Updated 4 months ago
- Scalable genomic analysis pipelines, written in WDL☆11Feb 24, 2026Updated last week
- Systematic Multi-Trait AAV Capsid Engineering for Efficient Gene Delivery (Eid et al., Nature Communications, 2024)☆11Aug 26, 2024Updated last year
- A repository for the Petagraph project☆14Dec 11, 2025Updated 2 months ago
- Repository for R and Python packages and reproduction codes in Weighted Conformalized Selection paper☆11Jul 21, 2023Updated 2 years ago
- Helper code for the 2021 Kaggle NFL Helmet Assignment Task☆13Sep 22, 2021Updated 4 years ago
- ☆50Aug 13, 2025Updated 6 months ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆274Feb 14, 2024Updated 2 years ago
- ☆51Aug 19, 2024Updated last year
- Claude Code skills for protein design☆108Jan 19, 2026Updated last month
- Adaptive Sparse Coding☆10Sep 6, 2016Updated 9 years ago
- Analysis workflow for investigating the structural context of PTMs☆11Jan 8, 2024Updated 2 years ago