naity / finetune-esmLinks
Scalable Protein Language Model Finetuning with Distributed Learning and Advanced Training Techniques such as LoRA.
☆26Updated last year
Alternatives and similar repositories for finetune-esm
Users that are interested in finetune-esm are comparing it to the libraries listed below
Sorting:
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆78Updated last year
- Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.☆63Updated 5 months ago
- ☆107Updated last year
- contrastive learning and pre-trained encoder for protein-ligand binding sites prediction☆29Updated 2 weeks ago
- RNA Multiple Sequence Alignment☆43Updated last year
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆60Updated 11 months ago
- Public repository describing training and testing of AntiBERTa.☆59Updated 2 years ago
- Efficient implementatin of ESM family.☆58Updated 5 months ago
- ☆66Updated 3 years ago
- ☆109Updated last year
- ☆110Updated 3 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆56Updated 7 months ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆115Updated 4 months ago
- Protein language model trained on coding DNA☆47Updated 8 months ago
- PLM based active learning model for protein engineering☆82Updated 11 months ago
- ☆35Updated 6 months ago
- ☆74Updated last month
- ☆60Updated 8 months ago
- Machine learning models for antibody sequences in PyTorch☆39Updated 4 years ago
- open source code for Tencent tFold☆105Updated 4 months ago
- Improved antibody structure-based design using inverse folding☆128Updated 2 months ago
- Learning the language of protein-protein interactions☆80Updated last month
- ☆35Updated last year
- RiboNucleic Acid (RNA) Language Model☆114Updated last month
- Contrastive learning harmonizing protein language models and natural language models☆32Updated last year
- ☆49Updated last year
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆105Updated 11 months ago
- Basic RNA 3D structure comparison metrics in RNA-Puzzles, including INF, DI and RMSD. It also includes `RNA_normalizer` tool in pdb_utils…☆22Updated 7 months ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆152Updated 2 months ago
- Code repository of "Deep generative design of RNA family sequences"☆35Updated last year