TARGENE / targene-pipeline
Nextflow pipeline for Targeted-Learning of genetic effects
☆11Updated this week
Related projects ⓘ
Alternatives and complementary repositories for targene-pipeline
- ☆27Updated this week
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆138Updated this week
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆320Updated last month
- Python package to perform enrichment analysis from omics data.☆161Updated 2 months ago
- Spatial alignment of single cell transcriptomic data.☆254Updated 5 months ago
- Bayesian Segmentation of Spatial Transcriptomics Data☆155Updated last week
- Flow & mass cytometry analytics.☆42Updated this week
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆156Updated 3 months ago
- A scanpy extension to analyse single-cell TCR and BCR data.☆220Updated this week
- Perturbation Analysis in the scverse ecosystem.☆141Updated 2 weeks ago
- Models and datasets for perturbational single-cell omics☆142Updated 2 years ago
- Python packaging for CPTAC data☆90Updated 4 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆145Updated 4 months ago
- CZ CELLxGENE Discover Census☆84Updated this week
- Python package for processing image-based profiling data☆79Updated last week
- Super-resolved spatial transcriptomics by deep data fusion☆67Updated last year
- ☆15Updated this week
- Multi-omic single-cell optimal transport tools☆115Updated this week
- Formalizing and benchmarking open problems in single-cell genomics☆320Updated this week
- muon is a multimodal omics Python framework☆218Updated 2 weeks ago
- LIANA+: an all-in-one framework for cell-cell communication☆164Updated last month
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆207Updated 4 years ago
- Formalizing and benchmarking open problems in single-cell genomics☆57Updated 2 months ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆108Updated this week
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆70Updated last week
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆107Updated 2 months ago
- Multiple-choice microscopy pipeline☆110Updated 3 weeks ago
- An open and interoperable data framework for spatial omics data☆235Updated this week
- Images and other data from the JUMP Cell Painting Consortium☆160Updated last week
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆119Updated last year