Alternatives and similar repositories for Convolutional-embedded-networks

Users that are interested in Convolutional-embedded-networks are comparing it to the libraries listed below

• PMBio / limix
  We have moved to https://github.com/limix/limix.
  ☆24Updated 8 years ago
• jpritt / boiler
  Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments
  ☆13Updated 9 years ago
• gagneurlab / concise
  Concise: Keras extension for regulatory genomics
  ☆35Updated 2 years ago
• drisso / mbkmeans
  K-means clustering for large single-cell datasets
  ☆11Updated 3 years ago
• cole-trapnell-lab / cicero
  ☆12Updated last year
• martinjzhang / single_cell_eb
  Empirical Bayes methods for single cell data
  ☆16Updated 5 years ago
• kundajelab / gkmexplain
  Accompanying repository for GkmExplain paper
  ☆23Updated 5 years ago
• raphael-group / netNMF-sc
  netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data
  ☆23Updated 4 years ago
• rmenegaux / fastDNA
  ☆24Updated 3 years ago
• kundajelab / dfim
  Deep Feature Interaction Maps (DFIM)
  ☆54Updated 6 years ago
• ma-compbio / PEP
  ☆14Updated 5 years ago
• audreyqyfu / LATE
  Imputation of single cell RNA-sequencing data with autoencoder
  ☆16Updated 4 years ago
• yjzhang / uncurl_python
  UNCURL is a tool for single cell RNA-seq data analysis.
  ☆15Updated 3 years ago
• trungnt13 / sisua
  SemI-SUpervised generative Autoencoder models for single cell data
  ☆18Updated 4 years ago
• xzhoulab / DRComparison
  Comparison of dimensionality reduction methods
  ☆30Updated 5 years ago
• andreaskapou / BPRMeth
  Modelling DNA methylation profiles
  ☆23Updated 5 years ago
• HelenaLC / simulation-comparison
  Snakemake workflow to benchmark scRNA-seq data simulators
  ☆13Updated 3 years ago
• NCBI-Hackathons / The-Broad-Institute-Single-Cell-RNA-Seq-Data-Set
  Visualize cancer genomes with FAIR single-cell RNA-seq data
  ☆11Updated 2 years ago
• kundajelab / seqdataloader
  Sequence data label generation and ingestion into deep learning models
  ☆12Updated 3 years ago
• architverma1 / tGPLVM
  tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data
  ☆17Updated 6 years ago
• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆42Updated 5 years ago
• dpeerlab / seqc
  Single-Cell Sequencing Quality Control and Processing Software
  ☆16Updated 3 years ago
• sirajulsalekin / DeepSNR
  Base-pair resolution detection of transcription factor binding site by deep deconvolutional network
  ☆10Updated 8 years ago
• aritra90 / TeraPCA
  TeraPCA is a multithreaded C++ software suite based on Intel's MKL library (or any other BLAS and/or LAPACK distribution). TeraPCA featur…
  ☆15Updated 3 years ago
• kieranrcampbell / embeddr
  This repository is retired software
  ☆13Updated 9 years ago
• pachterlab / PCCA
  Code for performing PCA followed by CCA
  ☆18Updated 6 years ago
• marcos-diazg / musica
  MuSiCa - Mutational Signatures in Cancer
  ☆23Updated last year
• LiuBioinfo / SeqOthello
  SeqOthello supports fast coverage query and containment query.
  ☆12Updated 6 years ago
• bioturing / hera-t
  Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol
  ☆18Updated 3 years ago
• Singh-Lab / Differential-Mutation-Analysis
  Differential Mutation Analysis
  ☆11Updated 5 years ago