A pure Python implementation of the SBOL standard.
☆22Feb 13, 2025Updated last year
Alternatives and similar repositories for pySBOL2
Users that are interested in pySBOL2 are comparing it to the libraries listed below
Sorting:
- Native python implementation of SBOL 3.0 specification☆43Mar 26, 2025Updated 11 months ago
- ☆26Dec 2, 2025Updated 2 months ago
- ☆15Updated this week
- The Synthetic Biology Open Language (SBOL)☆23Apr 25, 2023Updated 2 years ago
- Image analysis software for estimating cell density in arrayed microbial cultures growing on solid agar☆12Aug 16, 2017Updated 8 years ago
- Freelance bioinformaticians directory☆10Feb 10, 2023Updated 3 years ago
- ☆12Feb 19, 2017Updated 9 years ago
- Web application enabling users and software to browse, upload, and share synthetic biology designs☆79Updated this week
- repository-based plasmid design☆31Nov 28, 2022Updated 3 years ago
- A python wrapper for the benchling api☆50Sep 11, 2020Updated 5 years ago
- SBOL Designer Project☆31Jun 4, 2021Updated 4 years ago
- DNA overhang misannealing data for Python☆13May 15, 2025Updated 9 months ago
- A Python molecular biology CAD tool with a dead-simple user interface☆12Dec 8, 2022Updated 3 years ago
- The reference implementation of the SBOL Visual standard☆37Mar 20, 2023Updated 2 years ago
- iCodon customizes gene expression based on the codon composition☆15Oct 28, 2023Updated 2 years ago
- BigWig manpulation tools using libBigWig and htslib☆30Aug 8, 2024Updated last year
- Convert genbank, fasta, sbol to JSON and back again!☆34Jun 5, 2023Updated 2 years ago
- Short overhangs design for DNA assembly☆15Jun 8, 2022Updated 3 years ago
- DEPRECATED - Teselagen's Open Source Vector/Plasmid Editor Component☆206Jul 28, 2023Updated 2 years ago
- iBioSim is a computer-aided design (CAD) tool aimed for the modeling, analysis, and design of genetic circuits. It is capable of importin…☆64Dec 23, 2025Updated 2 months ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 6 years ago
- Fast bird catching fishes AKA realtime very high accuracy CPU basecaller for Oxford nanopore reads.☆15Oct 6, 2021Updated 4 years ago
- A Python package for Biopython that gives feature annotations from GenBank records a new and better life☆14Apr 27, 2016Updated 9 years ago
- Efficiently keep track of changes to genomes☆38Jul 22, 2024Updated last year
- A versatile DNA sequence optimizer☆263Nov 5, 2025Updated 3 months ago
- a DNA assembly library☆23Aug 13, 2025Updated 6 months ago
- Tao Liu's open source libraries for bioinformatics (unstable, pre-alpha)☆26Mar 23, 2021Updated 4 years ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Jan 9, 2026Updated last month
- Modify existing reference fasta and gff3/gtf files to include a new sequence☆33Jun 25, 2025Updated 8 months ago
- SARS-CoV-2 variant calling and consensus assembly pipeline☆26Sep 18, 2023Updated 2 years ago
- ☆22Oct 6, 2023Updated 2 years ago
- DNA plotting library for Python☆301Mar 20, 2024Updated last year
- A collection of open source bioinformatics tools developed and used by Addgene.☆11Sep 9, 2025Updated 5 months ago
- A PCR primer tool for DNA assembly flows☆33Apr 24, 2024Updated last year
- An R package implementing computational models of Eriksen flanker task performance.☆10Sep 19, 2025Updated 5 months ago
- Course material for CB2030☆13Feb 18, 2026Updated last week
- Coral, a library and framework for specifying synthetic biology design processes.☆34Dec 26, 2022Updated 3 years ago
- A utility for merging and genotyping Illumina-style GVCFs.☆33Feb 26, 2019Updated 7 years ago
- Core code for the DeepHF prediction tool☆40Jul 23, 2019Updated 6 years ago