Alternatives and similar repositories for SBOL-utilities

Users that are interested in SBOL-utilities are comparing it to the libraries listed below

• SynBioDex / pySBOL3
  Native python implementation of SBOL 3.0 specification
  ☆43Updated 10 months ago
• Global-Biofoundries-Alliance / SynBioPython
  General low-level API
  ☆50Updated 3 years ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆88Updated 6 years ago
• cnapy-org / CNApy
  An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…
  ☆62Updated last month
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆50Updated 5 years ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆35Updated 7 years ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆48Updated last month
• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆64Updated 8 months ago
• CovertLab / WholeCellEcoliRelease
  Release of the whole cell E. coli model.
  ☆76Updated last year
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆110Updated 5 months ago
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆124Updated 3 years ago
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆34Updated 2 years ago
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated 2 years ago
• opencobra / Medusa
  Analysis of ensembles of metabolic network reconstructions
  ☆21Updated 3 weeks ago
• Edinburgh-Genome-Foundry / SnapGeneReader
  👓 Python library to parse Snapgene *.dna files to dict or biopython seqrecord.
  ☆29Updated 8 months ago
• JBEI / ART
  A machine learning tool to improve the effectiveness of strain engineering in synthetic biology
  ☆61Updated last month
• segrelab / comets
  Computation of Microbial Ecosystems in Time and Space
  ☆26Updated last month
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆79Updated last week
• strateos / transcriptic
  Transcriptic CLI & Python Client Library
  ☆49Updated 2 years ago
• SysBioChalmers / Human-GEM
  The generic genome-scale metabolic model of Homo sapiens
  ☆125Updated 2 weeks ago
• SynBioDex / pySBOL2
  A pure Python implementation of the SBOL standard.
  ☆22Updated 11 months ago
• SysBioChalmers / yeast-GEM
  The consensus GEM for Saccharomyces cerevisiae
  ☆115Updated 2 months ago
• BioSystemsUM / MEWpy
  Metabolic Engineering Workbench
  ☆41Updated last year
• CovertLab / wcEcoli
  Whole Cell Model of E. coli
  ☆37Updated this week
• yachielab / QUEEN
  QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources
  ☆45Updated last week
• SynBioHub / synbiohub
  Web application enabling users and software to browse, upload, and share synthetic biology designs
  ☆79Updated last week
• SBRG / Recon3D
  A 3-Dimensional View of Human Metabolism and Disease
  ☆31Updated 7 years ago
• hsalis / SalisLabCode
  Models, design algorithms, and other software related to Salis lab publications
  ☆36Updated last year
• SynBioDex / SBOL-visual
  The reference implementation of the SBOL Visual standard
  ☆37Updated 2 years ago
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆97Updated this week