BenLangmead / seq-frontiers-class
Code, examples, reading list for JHU Frontiers of Sequencing Data Analysis class
☆24Updated 10 years ago
Related projects: ⓘ
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆42Updated 4 months ago
- [DEPRECATED] An R package for Google Genomics API queries.☆44Updated last year
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆40Updated 3 months ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 7 years ago
- Normalization for single cell RNA-seq data☆47Updated last year
- RNA-Seq Snakemake example with Jekyll homepage creation☆20Updated 10 years ago
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Updated 2 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 9 years ago
- R package for extracting mutation signatures from a list of somatic mutations☆37Updated 5 years ago
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆68Updated 3 years ago
- SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and he…☆86Updated 2 years ago
- [DEPRECATED] Docker containers for Bioconductor☆49Updated last year
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆43Updated 4 months ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 3 months ago
- Nozzle is a report generation toolkit for data analysis pipelines implemented in R.☆67Updated 8 years ago
- Bioconductor package "polyester", devel version. RNA-seq read simulator.☆89Updated 3 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆30Updated 6 years ago
- ☆45Updated 8 years ago
- TeraStructure is a new algorithm to fit Bayesian models of genetic variation in human populations on tera-sample-sized data sets (10^12 o…☆47Updated 4 years ago
- Tools for visualizing genomics data☆67Updated 2 years ago
- Reactome Pathway Analysis☆37Updated 3 weeks ago
- Course materials for the edX Data Analysis for Genomics☆35Updated 9 years ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆12Updated 5 years ago
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆30Updated 3 weeks ago
- Companion repo for ExAC paper, 2015☆33Updated 7 years ago
- Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens☆27Updated 5 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆50Updated last year
- Differential Count Data Analysis Toolbox☆60Updated 7 months ago
- Scalable RNA-seq analysis☆73Updated 3 years ago
- SummarizedBenchmark defines a flexible framework for benchmarking computational methods in R.☆15Updated 3 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Updated 8 years ago