StanfordBioinformatics / mvp_aaa_codelabs
Queries to perform qc and analysis on genomes in BigQuery
☆22Updated 7 years ago
Alternatives and similar repositories for mvp_aaa_codelabs:
Users that are interested in mvp_aaa_codelabs are comparing it to the libraries listed below
- Flexible Integration of Data with Deep LEarning☆50Updated last year
- Python library and scripts for retrieval and storage of genomics data in HDF5 format☆26Updated 5 years ago
- EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding o…☆69Updated last year
- An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data☆33Updated 2 years ago
- Simple and efficient access to genomic data for deep learning models.☆43Updated 5 years ago
- EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.☆73Updated this week
- Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · …☆61Updated 8 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 6 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated last year
- Efficient base quality score recalibrator for NGS data☆24Updated 9 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Understanding sequence conservation with deep learning☆19Updated 7 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- NGS course☆32Updated 7 years ago
- Arioc: GPU-accelerated DNA short-read alignment☆67Updated 3 weeks ago
- A collection of well-known bioinformatics programs.☆25Updated 9 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆34Updated 2 years ago
- Library for manipulating genomic variants and predicting their effects☆82Updated 6 months ago
- Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework☆70Updated 2 years ago
- Railroadtracks is a Python package to handle connected computation steps for DNA and RNA Seq.☆14Updated 9 years ago
- Learn interpretable computational phenotyping models from k-merized genomic data☆50Updated 2 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- An open-source high-performance web-based HTML5 genome browser. Genome Maps can be customized and allow browsing user data such as BAM an…☆39Updated 6 years ago
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆40Updated 2 months ago
- Tools for munging genomic data☆21Updated 5 years ago
- Quality control methods for human genomic variants.☆62Updated 2 years ago
- [Bio in Docker] Symposium 2015☆21Updated 7 years ago
- Fast and memory-efficient sequencing error corrector☆92Updated 9 months ago
- SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis☆25Updated 9 years ago
- DSDE Deep Learning Club☆40Updated 5 years ago