Alternatives and similar repositories for Rosalind-1

Users that are interested in Rosalind-1 are comparing it to the libraries listed below

• harvardinformatics / bioinformatics-coffee-hour
  Short lessons from FAS Informatics coffee hour
  ☆152Updated 2 years ago
• ISUgenomics / bioinformatics-workbook
  Bioinformatics Workbook repository
  ☆187Updated 2 months ago
• rnnh / bioinfo-notebook
  🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
  ☆177Updated 4 years ago
• melbournebioinformatics / MelBioInf_docs
  Melbourne Bioinformatics documentation in markdown format
  ☆115Updated 3 weeks ago
• griffithlab / rnabio.org
  website for the rnaseq course
  ☆104Updated last week
• rajewsky-lab / mirdeep2
  Discovering known and novel miRNAs from small RNA sequencing data
  ☆151Updated 10 months ago
• igordot / genomics
  A collection of scripts and notes related to genomics and bioinformatics
  ☆214Updated 3 months ago
• ewels / sra-explorer
  Web application to explore the Sequence Read Archive.
  ☆218Updated 3 months ago
• bli25 / RSEM_tutorial
  A short tutorial on how to use RSEM
  ☆137Updated 5 years ago
• nextflow-io / training
  Nextflow training material
  ☆183Updated this week
• CebolaLab / RNA-seq
  Step-by-step analysis pipeline for RNA-seq data
  ☆130Updated last year
• ENCODE-DCC / rna-seq-pipeline
  ☆152Updated 2 years ago
• ConesaLab / SQANTI3
  Tool for the Quality Control of Long-Read Defined Transcriptomes
  ☆231Updated last week
• hbctraining / Intro-to-rnaseq-hpc-O2
  This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
  ☆170Updated 4 years ago
• zonghui0228 / rosalind-solutions
  my solutions to problems from Rosalind.
  ☆97Updated 4 years ago
• hms-dbmi / hic-data-analysis-bootcamp
  Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.
  ☆201Updated 7 years ago
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆342Updated 11 months ago
• saketkc / pysradb
  Package for fetching metadata and downloading data from SRA/ENA/GEO
  ☆335Updated 3 weeks ago
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆215Updated last week
• BioinformaNicks / Bioinformatics-training-collection
  A collection of resources for learning about tools and programming languages related to Bioinformatics
  ☆176Updated 2 years ago
• deeptools / HiCExplorer
  HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
  ☆251Updated 3 weeks ago
• suhrig / arriba
  Fast and accurate gene fusion detection from RNA-Seq data
  ☆244Updated 3 months ago
• gpertea / gffcompare
  classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
  ☆234Updated 2 months ago
• timflutre / trimmomatic
  Read trimming tool for Illumina NGS data.
  ☆139Updated 10 years ago
• mdozmorov / Bioinformatics_notes
  Bioinformatics and genomics resources
  ☆77Updated 4 months ago
• CompEpigen / figeno
  Tool for plotting sequencing data along genomic coordinates.
  ☆296Updated 2 weeks ago
• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆104Updated 4 years ago
• BioOmics / iSeq
  Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.
  ☆202Updated 3 weeks ago
• vanheeringen-lab / seq2science
  Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workf…
  ☆163Updated 2 months ago
• rvalieris / parallel-fastq-dump
  parallel fastq-dump wrapper
  ☆298Updated 2 years ago