Alternatives and similar repositories for Rosalind-1

Users that are interested in Rosalind-1 are comparing it to the libraries listed below

• rnnh / bioinfo-notebook
  🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
  ☆176Updated 4 years ago
• ISUgenomics / bioinformatics-workbook
  Bioinformatics Workbook repository
  ☆187Updated last month
• rajewsky-lab / mirdeep2
  Discovering known and novel miRNAs from small RNA sequencing data
  ☆148Updated 9 months ago
• ConesaLab / SQANTI3
  Tool for the Quality Control of Long-Read Defined Transcriptomes
  ☆227Updated this week
• harvardinformatics / bioinformatics-coffee-hour
  Short lessons from FAS Informatics coffee hour
  ☆152Updated last year
• CebolaLab / RNA-seq
  Step-by-step analysis pipeline for RNA-seq data
  ☆124Updated last year
• griffithlab / rnabio.org
  website for the rnaseq course
  ☆102Updated last month
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆215Updated 2 months ago
• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆104Updated 3 years ago
• hbctraining / Intro-to-rnaseq-hpc-O2
  This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
  ☆170Updated 4 years ago
• melbournebioinformatics / MelBioInf_docs
  Melbourne Bioinformatics documentation in markdown format
  ☆116Updated last week
• PacificBiosciences / pbbioconda
  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
  ☆270Updated 4 months ago
• nloyfer / wgbs_tools
  tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
  ☆161Updated last month
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆341Updated 10 months ago
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆139Updated 3 years ago
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆234Updated 4 years ago
• bli25 / RSEM_tutorial
  A short tutorial on how to use RSEM
  ☆136Updated 5 years ago
• GoekeLab / bambu
  Reference-guided transcript discovery and quantification for long read RNA-Seq data
  ☆211Updated last week
• nextflow-io / training
  Nextflow training material
  ☆179Updated this week
• TransDecoder / TransDecoder
  TransDecoder source
  ☆291Updated 8 months ago
• snakemake-workflows / dna-seq-gatk-variant-calling
  This Snakemake pipeline implements the GATK best-practices workflow
  ☆254Updated 2 years ago
• ENCODE-DCC / rna-seq-pipeline
  ☆151Updated 2 years ago
• saketkc / pysradb
  Package for fetching metadata and downloading data from SRA/ENA/GEO
  ☆332Updated 4 months ago
• vanheeringen-lab / seq2science
  Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workf…
  ☆162Updated last month
• shenwei356 / bio_scripts
  Practical, reusable scripts for bioinformatics
  ☆101Updated 6 years ago
• NBISweden / GAAS
  Genome Assembly and Annotation Service code
  ☆212Updated last year
• igordot / genomics
  A collection of scripts and notes related to genomics and bioinformatics
  ☆213Updated 2 months ago
• suhrig / arriba
  Fast and accurate gene fusion detection from RNA-Seq data
  ☆243Updated 2 months ago
• gpertea / gffcompare
  classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
  ☆230Updated last month
• ewels / sra-explorer
  Web application to explore the Sequence Read Archive.
  ☆218Updated 2 months ago