🌲 a flexible gene expression simulator with codon-specific translation rates
☆13Jul 21, 2025Updated 9 months ago
Alternatives and similar repositories for pinetree
Users that are interested in pinetree are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genomics resources for the Long-Term Evolution Experiment with E. coli☆19Jul 13, 2025Updated 9 months ago
- Webserver and command line tool for annotating engineered plasmids☆17Apr 18, 2026Updated 3 weeks ago
- Time-resolved metagenomic sequencing of Lenski's long-term evolution experiment with Escherichia coli☆25Mar 11, 2019Updated 7 years ago
- Code associated with: AutoStepfinder: A fast and automated step detection method for single-molecule analysis Luuk Loeff, Jacob W J Kerss…☆11Jun 12, 2024Updated last year
- An interactive web application tool that enables big data visualization of the 136k+ UK Road Accidents reported during 2016.☆10Oct 19, 2022Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Temporal Pathway Synthesizer☆17Jun 28, 2024Updated last year
- ☆15Mar 4, 2019Updated 7 years ago
- ☆12May 6, 2021Updated 5 years ago
- The Databionic swarm is an unsupervised machine learning method for cluster analysis and the visualization of structures of high-dimensio…☆12May 15, 2024Updated last year
- MultiSKAT is an R-package focused at rare-variant analysis of continuous multiple phenotype data. This project contains the R-codes/funct…☆12Jun 11, 2019Updated 6 years ago
- Computational framework to identify promoter sequences from RNA-seq datasets☆11Sep 27, 2023Updated 2 years ago
- A modular compiler for biological chemical reaction networks☆51Apr 27, 2026Updated last week
- All design files and scripts necessary for the construction and use of the optoPlate-96☆11Apr 28, 2022Updated 4 years ago
- A terribly-simple data base for time series☆14Mar 25, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R package with Classes and Methods for Fast Memory-Efficient Boolean Selections☆13May 6, 2025Updated last year
- This repository contains FAQs (Frequently Asked Questions) for genome in a bottle project☆10Sep 28, 2018Updated 7 years ago
- General low-level API☆50Jul 18, 2022Updated 3 years ago
- Files for the Genome Design/Genome Analytics Short-course organized by the SBRG☆10Nov 30, 2021Updated 4 years ago
- ☆12Dec 17, 2024Updated last year
- R package providing date C++ library header files☆11Jan 14, 2026Updated 3 months ago
- This site provides information on conducting reproducible science using the R language.☆13Nov 2, 2016Updated 9 years ago
- Subplex Optimization Algorithm☆11Mar 23, 2026Updated last month
- Analyzes whole genome sequencing data for gene-editing verification☆10Feb 6, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R☆14Dec 23, 2025Updated 4 months ago
- ☆16Nov 25, 2024Updated last year
- The MorphoCut image processing pipeline library☆13Aug 11, 2025Updated 8 months ago
- SwRI mobile manipulation platform☆12Jun 8, 2018Updated 7 years ago
- bioscrape (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆16Jan 9, 2021Updated 5 years ago
- Arbitrary-precision arithmetic for R☆18May 5, 2023Updated 3 years ago
- CWL (and input file) parser for Golang, used by github.com/otiai10/yacle☆22Mar 19, 2019Updated 7 years ago
- High-performance stochastic modeling of DNA loop extrusion interactions☆18Dec 22, 2025Updated 4 months ago
- C++ implementation of SBOL 2.3.2☆17Oct 13, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆13Jun 22, 2017Updated 8 years ago
- ☆12Jan 23, 2020Updated 6 years ago
- Awesome Sticky Notes for Linux!☆13Apr 3, 2023Updated 3 years ago
- A collection of utility functions for R☆16Jan 19, 2026Updated 3 months ago
- ☆16May 1, 2026Updated last week
- Datetime functionality from the C API for R☆12Jan 19, 2026Updated 3 months ago
- Computation of Sparse Eigenvectors of a Matrix☆12Dec 22, 2018Updated 7 years ago