AllenNeuralDynamics / aind-ephys-spikesort-kilosort25-fullLinks
CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
☆12Updated last year
Alternatives and similar repositories for aind-ephys-spikesort-kilosort25-full
Users that are interested in aind-ephys-spikesort-kilosort25-full are comparing it to the libraries listed below
Sorting:
- pyqt5 dependent applications for IBL sessions☆30Updated 2 weeks ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆77Updated 6 months ago
- A curated list of awesome Neuropixels resources.☆117Updated this week
- Collection of probe description for probeinterface☆16Updated 3 weeks ago
- Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days☆70Updated this week
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆135Updated 3 months ago
- Multi-probe trajectory planning in an intuitive 3D environment☆56Updated 3 weeks ago
- Histology processing☆71Updated last month
- Utilities for managing Neuropixel datasets and Kilosort results☆49Updated 5 months ago
- Python package to handle probe layout, geometry and wiring to device.☆72Updated this week
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆63Updated 3 weeks ago
- CAD files for the Apollo Implant: a device for Chronic Neuropixels Implantation☆29Updated 2 months ago
- Registration of cells across sessions.☆75Updated last year
- Tools to work with Allen Inst CCF data in matlab☆142Updated 3 months ago
- WIP: Python port of Kilosort2☆50Updated 2 years ago
- Functions to assess quality of spike sorting results☆34Updated 2 years ago
- cortex lab code for electrophysiology☆85Updated last year
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆65Updated this week
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆40Updated last week
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆122Updated last year
- Code for Functional Mixed Models for Fiber Photometry☆13Updated 2 months ago
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆109Updated 2 weeks ago
- ☆52Updated last year
- Files and instructions for manufacturing NP1.0, NP2.0alpha, and NP2.0 Neuropixels chronic recording fixtures.☆24Updated 3 weeks ago
- miniscope analysis pipeline with interactive visualizations☆95Updated last year
- UnitRefine is a machine-learning toolbox that simplifies spike sorting curation by reducing manual curation.☆30Updated 3 months ago
- Multichannel time series lossless compression in pure Python based on NumPy and zlib☆41Updated 7 months ago
- a visualization method for neural data☆238Updated 6 months ago
- SpikeGLX recording system GUI [Neuropixels NI]☆98Updated this week