AllenNeuralDynamics / aind-ephys-spikesort-kilosort25-full
CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
☆11Updated last year
Alternatives and similar repositories for aind-ephys-spikesort-kilosort25-full:
Users that are interested in aind-ephys-spikesort-kilosort25-full are comparing it to the libraries listed below
- pyqt5 dependent applications for IBL sessions☆26Updated 3 weeks ago
- Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days☆58Updated last week
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆73Updated 3 weeks ago
- Utilities for managing Neuropixel datasets and Kilosort results☆46Updated last year
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆34Updated last month
- Multi-probe trajectory planning in an intuitive 3D environment☆53Updated 3 weeks ago
- Functions to assess quality of spike sorting results☆32Updated last year
- Web app for viewing results of ephys spike sorting☆25Updated 2 months ago
- pynapple collaborative data analysis (high level python scripts)☆37Updated last year
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆59Updated 2 months ago
- Histology processing☆65Updated 2 weeks ago
- ☆51Updated 8 months ago
- CAD files for the Apollo Implant: a device for Chronic Neuropixels Implantation☆23Updated last month
- Open Neurophysiology Environment☆19Updated last week
- A curated list of awesome Neuropixels resources.☆101Updated 3 months ago
- ☆21Updated this week
- Python code implementing the ZETA-test☆26Updated last month
- Match suite2p ROIs between imaging sessions☆25Updated 6 years ago
- Tutorials for using SpikeInterface on extracellular datasets.☆62Updated last year
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆57Updated this week
- Package for automatic post-processing and merging of multiple spike-sorting analyses.☆25Updated last month
- WIP: Python port of Kilosort2☆51Updated last year
- Python package to handle probe layout, geometry and wiring to device.☆61Updated this week
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆121Updated 3 months ago
- Region Of Interest Classification and Tracking☆18Updated last week
- cortex lab code for electrophysiology☆81Updated last year
- UnitRefine is a machine-learning toolbox that simplifies spike sorting curation by reducing manual curation.☆19Updated last week
- Browser-based NWB visualization and DANDI exploration☆57Updated last week
- Registration of cells across sessions.☆75Updated 8 months ago
- Python-based tools for pre-, post-processing, validating, and curating spike sorting datasets.☆50Updated 3 years ago