Deep learning for protein science
☆38Jun 2, 2024Updated 2 years ago
Alternatives and similar repositories for prtm
Users that are interested in prtm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Generative diverse protein backbones by protein language model☆35Feb 27, 2026Updated 3 months ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆257Mar 26, 2026Updated 2 months ago
- Inpainting protein sequence and structure☆12Nov 10, 2023Updated 2 years ago
- High-throughput framework for running molecular simulations for METL☆22Sep 18, 2025Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Shiny UI for the NGLVieweR package☆11Nov 19, 2024Updated last year
- Sequence-based protein solubility prediction using multidimensional embedding☆13Apr 19, 2021Updated 5 years ago
- ☆50Sep 25, 2024Updated last year
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Jul 25, 2022Updated 3 years ago
- Deep-learning models for Drug Discovery and Quantum Chemistry☆16Aug 11, 2017Updated 8 years ago
- Precise Generation of Conformational Ensembles for Intrinsically Disordered Proteins with IDPFold☆27Sep 13, 2024Updated last year
- Software package for FEP☆23Mar 3, 2026Updated 3 months ago
- Ultra-fast in-silico structure mutation☆37Apr 9, 2025Updated last year
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆38Nov 7, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A fine-tuned version of ProteinMPNN for generating stable cyclic peptide sequences☆42Feb 2, 2026Updated 4 months ago
- GitHub for AI4PD 2023 Workshop in Chile☆12Oct 12, 2023Updated 2 years ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆101Jun 11, 2025Updated last year
- A series of scripts that facilitate the prediction of user-defined protein structural properties using AlphaFold2☆12Aug 28, 2023Updated 2 years ago
- ProtT5 (Transformer) embeddings used for residue wise disorder prediction in proteins☆11Mar 11, 2024Updated 2 years ago
- Code for AlphaFold Distillation for Protein Design☆28Sep 18, 2025Updated 8 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated 3 months ago
- Experiment to slice, dice, and clean up spreadsheets☆15May 3, 2024Updated 2 years ago
- ☆38Dec 21, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- protein backbone refinement☆15Sep 12, 2024Updated last year
- ☆13Jul 17, 2025Updated 11 months ago
- Tools for annotation, processing and ML for antibody sequences☆44Apr 24, 2026Updated last month
- Alchemical mutation scoring map☆10May 19, 2024Updated 2 years ago
- ProteinFeatureAnalyzer extracts, analyzes and visualizes features from protein structures.☆14Mar 14, 2020Updated 6 years ago
- Transfer learning for Mutation Effect Prediction☆17Feb 13, 2024Updated 2 years ago
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆18Feb 8, 2024Updated 2 years ago
- PairMap: An Intermediate Insertion Approach for Improving the Accuracy of Relative Free Energy Perturbation Calculations for Distant Comp…☆17Mar 18, 2026Updated 2 months ago
- This is the code for our paper Ligand Binding Prediction using Protein Structure Graphs and Residual Graph Attention Networks☆11Apr 29, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆26Feb 11, 2026Updated 4 months ago
- Convert PDB residues to their Uniprot equivalents☆17Mar 31, 2020Updated 6 years ago
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- Generative Protein Emulator☆69Sep 25, 2025Updated 8 months ago
- ☆150Jul 16, 2025Updated 11 months ago
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆20Mar 6, 2024Updated 2 years ago
- Rosetta Funclib☆25May 9, 2020Updated 6 years ago