The BioPAX Object Model, API and utilities implemented in Java
☆28Jul 4, 2024Updated 2 years ago
Alternatives and similar repositories for Paxtools
Users that are interested in Paxtools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A project for exploring differentially active signaling paths related to proteomics datasets☆47Apr 2, 2026Updated 4 months ago
- Implementation of the cellular Potts model in pure javascript for fun an easy visualisation.☆11Mar 7, 2019Updated 7 years ago
- OncoPrint visualization☆23Jun 8, 2022Updated 4 years ago
- A package that provides a "mother" Shiny app to create "children" Shiny apps without writing one single line of code☆12Feb 17, 2020Updated 6 years ago
- ☆15Feb 6, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Simulation platform of animal embryogenesis☆21Jun 19, 2022Updated 4 years ago
- Rank Aggregation Algorithms☆13Jul 22, 2014Updated 12 years ago
- This script use to analyze the immune repertoire sequenced by high throughtput sequencing☆28Dec 16, 2021Updated 4 years ago
- Discovery of biological sequence motifs in R☆28Dec 20, 2018Updated 7 years ago
- Tool to predict (bio)chemical reactions using graph mining.☆23Nov 29, 2017Updated 8 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- Pipeline for the generation and simulation of personalized Flux Balance Analysis models☆11Feb 14, 2021Updated 5 years ago
- Lightest, themable article system, based on `GitHub`.☆24Apr 22, 2016Updated 10 years ago
- An alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome☆10Jan 25, 2019Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- commandline manipulation of genomic variants and NGS reads☆19Sep 6, 2024Updated last year
- Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statisticall…☆40Aug 11, 2026Updated 2 weeks ago
- A tool for investigating alternative mRNA splicing in next generation mRNA sequence data.☆12Mar 3, 2017Updated 9 years ago
- Web Application Development with R Using Shiny - Third Edition, published by Packt☆12Apr 11, 2021Updated 5 years ago
- ☆24Jun 7, 2024Updated 2 years ago
- Issues and pull requests for BiocStyle should go here.☆15Jul 21, 2026Updated last month
- A Comprehensive R Package For Analyzing Quantitative Phosphoproteomics Data☆13Nov 30, 2022Updated 3 years ago
- Functional Analysis of Metagenomes by Likelihood Inference☆17Sep 8, 2025Updated 11 months ago
- RNA dependent RNA Polymerase Palmprint Analysis☆13Aug 1, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆10Oct 17, 2019Updated 6 years ago
- ☆11Apr 11, 2017Updated 9 years ago
- ORION is a tool that ingests datasets from diverse knowledge bases and transforms them into modular, interoperable knowledge graphs.☆18Updated this week
- Code base for profiling highly replicated differential gene expression RNA-seq.☆11Dec 13, 2021Updated 4 years ago
- ChimPipe: Accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data☆15Jan 22, 2026Updated 7 months ago
- Connect the dots in networks.☆22Aug 28, 2020Updated 6 years ago
- A software to detect virome-wide integrations☆13Jan 27, 2021Updated 5 years ago
- CLUMPS adapted to post-translational modifications.☆10May 22, 2025Updated last year
- ☆15Jun 24, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆19Jul 19, 2026Updated last month
- PAthway Representation and Analysis by Direct Inference on Graphical Models☆46Feb 7, 2018Updated 8 years ago
- The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the …☆25Jun 10, 2026Updated 2 months ago
- Markdown version of Cytoscape manual☆12Sep 27, 2025Updated 11 months ago
- Magnetosome gene cluster annotation, screening and visualization tool☆12Jul 2, 2025Updated last year
- PathVisio - pathway editor, visualization and analysis software☆28Jan 22, 2025Updated last year
- Method used in the study on germline mutation rate estimation in 68 species of vertebrates.☆17Oct 11, 2021Updated 4 years ago