The BioPAX Object Model, API and utilities implemented in Java
☆28Jul 4, 2024Updated last year
Alternatives and similar repositories for Paxtools
Users that are interested in Paxtools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pathway visualization and analysis tool for Pathway Commons and other BioPAX data☆14May 25, 2022Updated 4 years ago
- A project for exploring differentially active signaling paths related to proteomics datasets☆46Apr 2, 2026Updated 2 months ago
- Repository of the pipeline of computational methods for logical modelling of biological networks that are deregulated in diseases, develo…☆10Mar 14, 2026Updated 3 months ago
- Implementation of the cellular Potts model in pure javascript for fun an easy visualisation.☆11Mar 7, 2019Updated 7 years ago
- OncoPrint visualization☆23Jun 8, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A package that provides a "mother" Shiny app to create "children" Shiny apps without writing one single line of code☆12Feb 17, 2020Updated 6 years ago
- structure detection program☆18Nov 20, 2024Updated last year
- Sample Level Analysis of Pathway Alteration Enrichments☆10Jan 21, 2019Updated 7 years ago
- ☆12Apr 24, 2020Updated 6 years ago
- Pheno4j: a graph based HPO to NGS database☆34Jun 13, 2023Updated 3 years ago
- Analysis tools for PhIP-seq experiments☆12Jan 24, 2022Updated 4 years ago
- Rank Aggregation Algorithms☆13Jul 22, 2014Updated 11 years ago
- A light weight shiny based web app to access TCGA data☆15Apr 29, 2015Updated 11 years ago
- ISB CGC Webapp☆12Dec 3, 2025Updated 6 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Pipeline for the generation and simulation of personalized Flux Balance Analysis models☆11Feb 14, 2021Updated 5 years ago
- Simulation platform of animal embryogenesis☆21Jun 19, 2022Updated 4 years ago
- ☆15Feb 6, 2021Updated 5 years ago
- commandline manipulation of genomic variants and NGS reads☆19Sep 6, 2024Updated last year
- An alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome☆10Jan 25, 2019Updated 7 years ago
- Score an Affinity Purification Mass Spectrometry Proteomics Experiment for Interactor Confidence☆11Jun 24, 2015Updated 11 years ago
- This script use to analyze the immune repertoire sequenced by high throughtput sequencing☆27Dec 16, 2021Updated 4 years ago
- Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statisticall…☆40Apr 23, 2026Updated 2 months ago
- A utility that simulates a memory leak for testing and diagnostic purposes.☆13Feb 10, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆19Jun 11, 2025Updated last year
- Method used in the study on germline mutation rate estimation in 68 species of vertebrates.☆17Oct 11, 2021Updated 4 years ago
- Haystack 2, Docker, and Llama 2, convert invoice PDFs into a local vector database and query for detailed insights.☆16Apr 14, 2024Updated 2 years ago
- RNA dependent RNA Polymerase Palmprint Analysis☆13Aug 1, 2024Updated last year
- Issues and pull requests for BiocStyle should go here.☆15Apr 29, 2026Updated 2 months ago
- PhosIDN: an integrated deep neural network for improving protein phosphorylation site prediction by combining sequence and protein–protei…☆12Nov 30, 2020Updated 5 years ago
- ☆11Apr 11, 2017Updated 9 years ago
- A detailed guide to analise and integrate small-RNASeq and RNASeq samples using miARma-Seq☆11Oct 16, 2019Updated 6 years ago
- python based queries for the proteomesoflife neo4j network database☆14Jun 17, 2020Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions.☆16Oct 19, 2019Updated 6 years ago
- Connect the dots in networks.☆21Aug 28, 2020Updated 5 years ago
- ☆24Jun 7, 2024Updated 2 years ago
- fast, memory-efficient, pythonic (and command-line) access to fasta sequence files☆87Dec 11, 2017Updated 8 years ago
- Code base for profiling highly replicated differential gene expression RNA-seq.☆11Dec 13, 2021Updated 4 years ago
- ☆22Dec 9, 2025Updated 6 months ago
- CLUMPS adapted to post-translational modifications.☆10May 22, 2025Updated last year