masih4 / DigiPathoImageAnalysis
List of academic institutes/companies working on computer-based digital pathology image analysis
☆39Updated 2 months ago
Alternatives and similar repositories for DigiPathoImageAnalysis:
Users that are interested in DigiPathoImageAnalysis are comparing it to the libraries listed below
- Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.☆76Updated 2 years ago
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆52Updated last year
- This repository contains the implementation of TILAb-score as described in the original paper.☆18Updated 5 years ago
- Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine☆30Updated 2 years ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆66Updated 2 years ago
- Re-stained whole slide image alignment☆32Updated last year
- A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.☆28Updated 8 months ago
- Full package for applying deep learning to virtual slides.☆68Updated 6 years ago
- ☆56Updated 4 months ago
- ☆52Updated 3 years ago
- Histopathology Image Analysis☆93Updated last year
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆51Updated 2 years ago
- GPU-accelerated stain normalization command line tool☆19Updated last year
- Histopathology Slides Preprocessing Pipeline☆36Updated 2 months ago
- Sparse Convolutional Context-Aware Multiple Instance Learning for Whole Slide Image Classification | https://arxiv.org/abs/2105.02726☆26Updated 3 years ago
- Pretrained model for self supervised histopathology☆110Updated 2 years ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆96Updated 2 months ago
- Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.☆54Updated 2 years ago
- Official code for "Self-Supervised driven Consistency Training for Annotation Efficient Histopathology Image Analysis" Published in Medic…☆62Updated 2 years ago
- Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering☆99Updated last year
- ☆43Updated last year
- Interactive Segmentation of Nucleus☆61Updated 2 years ago
- Pipeline for computational pathology☆34Updated last year
- Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.☆22Updated 4 years ago
- Implementation of Cluster-to-Conquer: A Framework for End-to-End Multi-Instance Learning for Whole Slide Image Classification approach.☆60Updated 3 years ago
- 🔬 Code-free deep segmentation for computational pathology☆53Updated 8 months ago
- Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning☆52Updated last year
- ☆36Updated 2 years ago
- A pipeline to segment tissue from the background in histological images☆67Updated last year
- Coincides with blogpost for using geojson and shapely☆31Updated 4 years ago