transbioZI / BioMM
BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data
☆14Updated last year
Related projects ⓘ
Alternatives and complementary repositories for BioMM
- ☆42Updated 3 weeks ago
- Fine-tuning polygenic risk score models using GWAS summary statistics☆41Updated last month
- Kidney Epigenome and Transcriptome-based multi-stage Prioritization☆16Updated 2 years ago
- Configs and descriptions of circos plots created on FUMA web application☆11Updated 6 years ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆28Updated 2 years ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆32Updated 4 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 3 years ago
- ☆11Updated 2 years ago
- R package for the identification of cancer-associated mutated genes using gene expression and mutation data.☆10Updated 3 years ago
- GWAS QC, PCA, haplotype phasing, genotype imputation☆17Updated last month
- From IDAT to beta.☆25Updated 6 years ago
- ☆32Updated last year
- Source code of FUMA GWAS web application☆53Updated last year
- Package for calculation of Homologous Recombination Deficiency☆13Updated 4 years ago
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆16Updated 2 months ago
- Immune evasion before tumor invasion in early squamous lung cell carcinogenesis☆16Updated 3 years ago
- Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"☆12Updated 4 years ago
- ☆24Updated 4 years ago
- ☆19Updated 5 months ago
- MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…☆39Updated 4 months ago
- 10x single cell RNA-seq data from the developing mouse retina☆16Updated 3 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆32Updated 2 years ago
- ☆18Updated 2 years ago
- Proteome-Wide Association Study☆42Updated 3 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comp…☆24Updated last week
- ☆46Updated last year
- A framework to infer mutational signatures in cancer over time☆53Updated 5 years ago
- List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS☆28Updated 2 weeks ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 3 years ago