mosdef-hub / msibi
A package for managing pair-potential derivation using MultiState Iterative Boltzmann Inversion (MS-IBI)
☆10Updated 3 weeks ago
Related projects: ⓘ
- Physical validation of molecular simulations☆55Updated 2 months ago
- Dynamic Histogram Analysis To Determine Free Energies and Rates from Biased Simulations☆19Updated 6 years ago
- Sample molecular simulation workflows using a MoSDeF and community tools☆13Updated 2 years ago
- Generate coarse-grained molecular dynamics models from atomistic trajectories.☆57Updated last year
- Python version of the modified Seminario method code☆16Updated 3 years ago
- A comprehensive tool for analyzing liquid solvation structure.☆46Updated 2 months ago
- Main code repository for FATSLiM☆21Updated 2 years ago
- Python bindings for TNG file format☆13Updated 2 weeks ago
- Materials for the 2021 PRACE Workshop @ SurfSARA☆31Updated 2 years ago
- Dihedral scanner with wavefront propagation☆31Updated 5 months ago
- a tool for creating Molecular Dynamics-ready models of polymeric systems☆22Updated 5 years ago
- MDAnalysis wrapper around Packmol☆25Updated last year
- Reads Gromacs EDR file to populate a pandas dataframe☆30Updated 8 months ago
- Suite of programs to perform non-linear dimensionality reduction -- sketch-map in particular☆44Updated 7 months ago
- Automatic MARTINI parametrization of small organic molecules☆57Updated 2 weeks ago
- Automatic detection of equilibrated regions of molecular simulations☆17Updated 7 years ago
- Quickly generate, start and analyze benchmarks for molecular dynamics simulations.☆75Updated 2 weeks ago
- Bayesian tools for fitting molecular mechanics torsion parameters to quantum chemical data.☆19Updated 3 years ago
- A general small molecule force field descended from AMBER99 and parm@Frosst, available in the SMIRNOFF format☆28Updated last week
- ☆55Updated last month
- This library tackles the construction and efficient execution of computational chemistry workflows☆45Updated 7 months ago
- Python Library for Automating Molecular Simulations☆64Updated this week
- A client interface to the QCArchive Project (read-only image of QCFractal)☆35Updated last year
- A Python toolkit for the analyis of lipid membrane simulations☆29Updated 3 months ago
- ☆57Updated this week
- Best Practices article intended for LiveCoMS☆36Updated 4 years ago
- Cassandra is a Monte Carlo package to conduct atomistic simulations.☆39Updated 4 months ago
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆54Updated last year
- A python implementation of the string method with swarms of trajectories using GROMACS☆17Updated last year
- Parallel algorithms for MDAnalysis☆31Updated last month