NorwegianVeterinaryInstitute / BioinfTraining
Repository for bioinformatics training at the Norwegian Veterinary Institute
☆41Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for BioinfTraining
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆54Updated 4 years ago
- ☆68Updated 3 years ago
- Statistical analysis for sparse high-throughput sequencing☆67Updated 8 months ago
- Workshop materials for shotgun metagenomics☆36Updated 7 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆71Updated 11 months ago
- Bioinformatics Tools☆81Updated 2 weeks ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆108Updated 5 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆46Updated last year
- Making whole bacterial genome sequencing data analysis easy☆99Updated this week
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 2 years ago
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆51Updated last year
- Assembly and intrahost/low-frequency variant calling for viral samples☆123Updated this week
- Visualize microbiome data with black magic ggtree☆68Updated 4 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated 7 months ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆127Updated 8 months ago
- Repository of common bioinformatics scripts☆38Updated 3 years ago
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆86Updated last month
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆52Updated 2 months ago
- Collection of scripts for bacterial genomics☆44Updated 4 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated last year
- Tutorial on using E-utilities☆19Updated 3 years ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆26Updated last year
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆47Updated 2 years ago
- SHallow shOtGUN profiler☆54Updated 2 years ago
- Site to help biologists wade their way into bioinformatics.☆35Updated last month
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆70Updated 10 months ago
- Plotting tools for nanopore methylation data☆90Updated 5 months ago
- Tips for Nextflow and cheatsheet for channel operation☆69Updated 3 months ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Updated 8 years ago
- ☆23Updated 6 years ago
- Statistical Analysis of Metagenomic Profiles☆91Updated 4 years ago