Alternatives and similar repositories for DeepZ_data_creation

Users that are interested in DeepZ_data_creation are comparing it to the libraries listed below

• AIRI-Institute / GENA_LM
  GENA-LM is a transformer masked language model trained on human DNA sequence.
  ☆197Updated this week
• VladimirShitov / nafig
  "NA Figure": visualization of the missing data distribution
  ☆15Updated last year
• ComputationalAgingLab / ComputAge
  A library for full-stack aging clocks design and benchmarking.
  ☆31Updated 5 months ago
• john-bradshaw / ml-in-bioinformatics-summer-school-2020
  Tutorial for "Advances in machine learning for molecules" (for Summer School for Machine Learning in Bioinformatics, https://cs.hse.ru/ss…
  ☆20Updated 4 years ago
• autosome-ru / LegNet
  accurate prediction of promoter activity and variant effects from massive parallel reporter assays
  ☆37Updated 2 months ago
• SteshinSS / lohi_splitter
  Lo-Hi Splitter for Modern Splits of Molecular Datasets
  ☆52Updated 8 months ago
• czbiohub-sf / simscity
  A library to simulate single-cell data
  ☆2Updated 2 years ago
• serjisa / transcriptomics.msu
  Materials for Transcripromics Data Analysis course at Moscow State University
  ☆68Updated last year
• AIRI-Institute / SEMAi
  Spatial Epitope Modeling with Artificial intelligence (SEMA)
  ☆39Updated last year
• gagneurlab / concise
  Concise: Keras extension for regulatory genomics
  ☆35Updated 2 years ago
• jmschrei / ledidi
  Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.
  ☆83Updated 2 weeks ago
• shtoneyan / gopher
  Toolset for training quantitative sequence to function models.
  ☆23Updated last year
• AIRI-Institute / PROSTATA
  ☆30Updated last year
• quadbio / latent-lego
  Latent spaces for single cells
  ☆21Updated last year
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆48Updated 10 months ago
• Karollus / SequenceModelBenchmark
  ☆9Updated 2 years ago
• pinellolab / pyrovelocity
  𝒫robabilistic modeling of RNA velocity ⬱
  ☆47Updated this week
• lucidrains / tf-bind-transformer
  A repository with exploration into using transformers to predict DNA ↔ transcription factor binding
  ☆85Updated 3 years ago
• ihh / bilby
  Jax code for functional genomics ML
  ☆14Updated 3 months ago
• lovelyscientist / rna-seq-vae
  Variational Auto-Encoder that generates synthetic gene expression data
  ☆23Updated 2 years ago
• mhorlacher / rbpnet
  ☆18Updated last year
• shu65 / open-problems-multimodal
  1st place solution of Kaggle Open Problems - Multimodal Single-Cell Integration
  ☆43Updated 2 years ago
• ma-compbio / SPEID
  ☆14Updated 8 years ago
• bernardo-de-almeida / DeepSTARR_embryo
  Deep learning models to predict enhancers in different Drosophila embryo tissues
  ☆17Updated last year
• Genentech / iterative-perturb-seq
  Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors
  ☆40Updated last year
• bowang-lab / BIONIC
  Biological Network Integration using Convolutions
  ☆62Updated last year
• hammerlab / t-cell-relation-extraction
  Literature mining for T cell relations
  ☆23Updated 2 years ago
• JaesikKim / HiG2Vec
  ☆23Updated 2 years ago
• goodarzilab / pyteiser
  Python implementation of TEISER also capable of using SHAPE structural probing data
  ☆12Updated 5 months ago
• Shujun-He / Nucleic-Transformer
  ☆23Updated 2 years ago