amplab / snapLinks
Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
☆292Updated 2 months ago
Alternatives and similar repositories for snap
Users that are interested in snap are comparing it to the libraries listed below
Sorting:
- Official code repository for GATK versions 1.0 through 3.7 (full licensed package). For GATK 4 code, see the https://github.com/broadinst…☆143Updated 6 years ago
- de novo sequence assembler using string graphs☆241Updated 5 years ago
- GenomicsDB☆111Updated 2 years ago
- Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk…☆294Updated 6 years ago
- An ultrafast memory-efficient short read aligner☆264Updated 3 years ago
- This repo is DEPRECATED. Please use minimap2, the successor of minimap.☆105Updated 7 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆182Updated 5 years ago
- Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework☆70Updated 2 years ago
- Fast and memory-efficient sequencing error corrector☆93Updated last year
- C++ API & command-line toolkit for working with BAM data☆425Updated last month
- Assemble large genomes using short reads☆321Updated 3 months ago
- Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo sh…☆291Updated 7 years ago
- Implementation of Positional Burrows-Wheeler Transform for genetic data☆107Updated 3 months ago
- FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON…☆206Updated 3 years ago
- This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka☆37Updated 8 years ago
- ☆270Updated this week
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆214Updated 2 weeks ago
- lumpy: a general probabilistic framework for structural variant discovery☆331Updated 3 years ago
- SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…☆69Updated 5 years ago
- a toolkit for working with Oxford nanopore data☆245Updated 2 years ago
- NGS Language Bindings☆119Updated last year
- A flexible framework for rapid genome analysis and interpretation☆317Updated 2 years ago
- A fast approximate aligner for long DNA sequences☆282Updated 9 months ago
- ☆311Updated 7 months ago
- Fast genome and metagenome distance estimation using MinHash☆415Updated last year
- MinHash Alignment Process (MHAP, pronounced MAP): locality-sensitive hashing to detect long-read overlaps and utilities☆96Updated 3 years ago
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆212Updated 5 years ago
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆234Updated last year
- Reads simulator☆280Updated 3 years ago
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆94Updated 8 months ago