amplab / snap
Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
☆290Updated last month
Alternatives and similar repositories for snap:
Users that are interested in snap are comparing it to the libraries listed below
- Official code repository for GATK versions 1.0 through 3.7 (full licensed package). For GATK 4 code, see the https://github.com/broadinst…☆143Updated 6 years ago
- de novo sequence assembler using string graphs☆241Updated 5 years ago
- GenomicsDB☆111Updated 2 years ago
- Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk…☆294Updated 6 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆182Updated 5 years ago
- Fast and memory-efficient sequencing error corrector☆92Updated 11 months ago
- ☆268Updated 4 months ago
- Fast genome and metagenome distance estimation using MinHash☆401Updated last year
- Assemble large genomes using short reads☆317Updated 2 weeks ago
- C++ API & command-line toolkit for working with BAM data☆422Updated 9 months ago
- This repo is DEPRECATED. Please use minimap2, the successor of minimap.☆105Updated 7 years ago
- Reads simulator☆273Updated 3 years ago
- Implementation of Positional Burrows-Wheeler Transform for genetic data☆105Updated 3 weeks ago
- Fast and frugal disk based k-mer counter☆287Updated 4 months ago
- Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework☆70Updated 2 years ago
- Find all significant local alignments between reads☆141Updated 9 months ago
- This repository contains data indexes from NIST's Genome in a Bottle project.☆247Updated last year
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆209Updated 4 years ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆321Updated last year
- FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON…☆204Updated 3 years ago
- A flexible framework for rapid genome analysis and interpretation☆316Updated 2 years ago
- lumpy: a general probabilistic framework for structural variant discovery☆322Updated 2 years ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆206Updated this week
- A tool set for short variant discovery in genetic sequence data.☆196Updated 3 years ago
- Global alignment and alignment extension☆131Updated last year
- NGS Language Bindings☆119Updated last year
- An ultrafast memory-efficient short read aligner☆261Updated 2 years ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆219Updated 6 months ago
- A fast approximate aligner for long DNA sequences☆280Updated 6 months ago
- Count bases in BAM/CRAM files☆315Updated 3 years ago