Alternatives and similar repositories for snap

Users that are interested in snap are comparing it to the libraries listed below

• broadgsa / gatk-protected
  Official code repository for GATK versions 1.0 through 3.7 (full licensed package). For GATK 4 code, see the https://github.com/broadinst…
  ☆143Updated 6 years ago
• broadgsa / gatk
  Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk…
  ☆294Updated 6 years ago
• jts / sga
  de novo sequence assembler using string graphs
  ☆241Updated 6 years ago
• Intel-HLS / GenomicsDB
  GenomicsDB
  ☆111Updated 2 years ago
• BenLangmead / bowtie
  An ultrafast memory-efficient short read aligner
  ☆264Updated 3 years ago
• isovic / graphmap
  GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…
  ☆182Updated 6 years ago
• ncbi / ngs
  NGS Language Bindings
  ☆119Updated last year
• dzerbino / velvet
  Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo sh…
  ☆291Updated 7 years ago
• PacificBiosciences / FALCON
  FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON…
  ☆206Updated 3 years ago
• arq5x / lumpy-sv
  lumpy: a general probabilistic framework for structural variant discovery
  ☆333Updated 3 years ago
• bcgsc / abyss
  Assemble large genomes using short reads
  ☆322Updated 4 months ago
• hall-lab / speedseq
  A flexible framework for rapid genome analysis and interpretation
  ☆318Updated 2 years ago
• sequencing / isaac_variant_caller
  This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka
  ☆37Updated 8 years ago
• pezmaster31 / bamtools
  C++ API & command-line toolkit for working with BAM data
  ☆427Updated 2 months ago
• mourisl / Lighter
  Fast and memory-efficient sequencing error corrector
  ☆93Updated last year
• marbl / Mash
  Fast genome and metagenome distance estimation using MinHash
  ☆417Updated last year
• arq5x / poretools
  a toolkit for working with Oxford nanopore data
  ☆245Updated 2 years ago
• lh3 / wgsim
  Reads simulator
  ☆281Updated 3 years ago
• maickrau / GraphAligner
  ☆271Updated 2 weeks ago
• brentp / goleft
  goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary
  ☆221Updated 10 months ago
• citiususc / SparkBWA
  SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…
  ☆69Updated 5 years ago
• OpenGene / AfterQC
  Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
  ☆211Updated 5 years ago
• thegenemyers / DALIGNER
  Find all significant local alignments between reads
  ☆141Updated last year
• genome / bam-readcount
  Count bases in BAM/CRAM files
  ☆319Updated 3 years ago
• dellytools / delly
  DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
  ☆478Updated last week
• genome-in-a-bottle / giab_data_indexes
  This repository contains data indexes from NIST's Genome in a Bottle project.
  ☆252Updated last year
• pangenome / odgi
  Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs
  ☆218Updated 2 weeks ago
• brentp / smoove
  structural variant calling and genotyping with existing tools, but, smoothly.
  ☆256Updated last year
• richarddurbin / pbwt
  Implementation of Positional Burrows-Wheeler Transform for genetic data
  ☆108Updated 4 months ago
• lh3 / minimap
  This repo is DEPRECATED. Please use minimap2, the successor of minimap.
  ☆105Updated 7 years ago