Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
☆299Sep 6, 2025Updated 10 months ago
Alternatives and similar repositories for snap
Users that are interested in snap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast and accurate genomic distances using HyperLogLog☆162Jan 19, 2023Updated 3 years ago
- The next version of bwa-mem☆852Oct 15, 2025Updated 9 months ago
- Bayesian haplotype-based mutation calling☆324Feb 13, 2026Updated 5 months ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆406Jun 16, 2026Updated last month
- Plot structural variant signals from many BAMs and CRAMs☆572Jul 13, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- The Modular Aligner and The Modular SV Caller☆47Jul 18, 2023Updated 3 years ago
- A fast approximate aligner for long DNA sequences☆288Oct 11, 2024Updated last year
- Long read aligner☆115May 26, 2023Updated 3 years ago
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆198Mar 8, 2022Updated 4 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆49Apr 20, 2026Updated 3 months ago
- Structural variant detection and association testing☆109Feb 2, 2023Updated 3 years ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 6 years ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆227Sep 18, 2025Updated 10 months ago
- BWA-MEME: Faster BWA-MEM2 using learned-index☆139Jun 3, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- base-accurate DNA sequence alignments using WFA and mashmap3☆220Updated this week
- ☆289Dec 29, 2025Updated 6 months ago
- lumpy: a general probabilistic framework for structural variant discovery☆344Feb 22, 2026Updated 5 months ago
- Flexible genotype query among 30,000+ samples whole-genome☆95Sep 4, 2019Updated 6 years ago
- BigWig and BAM utilities☆103Mar 26, 2024Updated 2 years ago
- Toolkit for calling structural variants using short or long reads☆115Jul 14, 2026Updated last week
- Aligns short reads using dynamic seed size with strobemers☆203Updated this week
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 4 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆527Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- Successor of bwa-mem for short-read alignment☆307Updated this week
- Structural variant (SV) analysis tools☆41Jul 1, 2024Updated 2 years ago
- A tool set for short variant discovery in genetic sequence data.☆207May 4, 2021Updated 5 years ago
- Per-base per-nucleotide depth analysis☆150May 9, 2026Updated 2 months ago
- Tools for working with SAM/BAM data☆613Dec 22, 2024Updated last year
- Quickly calculate and visualize sequence coverage in alignment files☆101Jun 22, 2019Updated 7 years ago
- StriDe Assembler☆25Nov 23, 2017Updated 8 years ago
- Detect novel (and reference) STR expansions from short-read data☆71Dec 6, 2025Updated 7 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- BAM Statistics, Feature Counting and Annotation☆155Updated this week
- efficient alignment of strings to partially ordered string graphs☆33Apr 22, 2026Updated 3 months ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆187Apr 12, 2024Updated 2 years ago
- WFA-lib: Wavefront alignment algorithm library v2☆223Jul 15, 2026Updated last week
- Unfazed by genomic variant phasing☆28May 26, 2024Updated 2 years ago
- de Bruijn Graph-based read aligner☆36Sep 3, 2018Updated 7 years ago
- Long read / genome alignment software☆329Dec 16, 2025Updated 7 months ago