exaloop / seqLinks
Codon's bioinformatics module
☆57Updated 5 months ago
Alternatives and similar repositories for seq
Users that are interested in seq are comparing it to the libraries listed below
Sorting:
- ziglang + htslib☆20Updated 4 years ago
- toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files☆22Updated last year
- Fast interval intersection library☆44Updated 4 months ago
- Fasten toolkit, for streaming operations on fastq files☆81Updated 2 months ago
- sfasta☆35Updated 8 months ago
- A high efficiency binary format for sequencing data☆87Updated this week
- A LaTeX package for drawing genetic construct pictograms using TikZ.☆11Updated 3 years ago
- Fast & accurate alignment of barcoded short-reads☆32Updated 2 years ago
- A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.☆53Updated 2 weeks ago
- Implicit Interval Tree with Interpolation Index☆42Updated 3 years ago
- modular k-mer count matrix and Bloom filter construction for large read collections☆85Updated 3 weeks ago
- An efficient index for the colored, compacted, de Bruijn graph☆110Updated last year
- drunk on perbase pileups and lua expressions☆19Updated last month
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 7 months ago
- quickly filter fastq files by matching sequences to a set of regex patterns☆57Updated 3 weeks ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- 🧬 Efficient parallelized peta-scale protein database search☆40Updated 2 years ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆92Updated 8 months ago
- Efficient, parallel compression for terabyte-scale data☆55Updated 3 months ago
- Substring index for paths in a graph☆60Updated last week
- A repository for generating strobemers and evalaution☆79Updated last year
- GFA parser in Rust☆30Updated 2 years ago
- gia: Genomic Interval Arithmetic☆65Updated last year
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆49Updated 3 weeks ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆34Updated last year
- A fast, AVX2 and ARM Neon accelerated FM index library☆36Updated last year
- Layout module for raw de novo genome assembly of long uncorrected reads.☆20Updated 4 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 2 months ago
- A better, faster way to count guides in CRISPR screens.☆34Updated 8 months ago