exaloop / seq
Codon's bioinformatics module
☆47Updated 6 months ago
Alternatives and similar repositories for seq:
Users that are interested in seq are comparing it to the libraries listed below
- An efficient index for the colored, compacted, de Bruijn graph☆107Updated 3 months ago
- Fasten toolkit, for streaming operations on fastq files☆77Updated last week
- toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files☆22Updated 5 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated 7 months ago
- ziglang + htslib☆20Updated 3 years ago
- Single-Cell RNA-seq pseudo-aligner☆51Updated 8 months ago
- GFA parser in Rust☆30Updated last year
- Fast interval intersection library☆35Updated this week
- Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly☆117Updated last week
- SQL-like query language for the SAM/BAM file format☆26Updated last year
- A repository for generating strobemers and evalaution☆77Updated 9 months ago
- Build and maintain multiple custom conda environments all in one place.☆37Updated last month
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆128Updated 11 months ago
- SQL support plugin for Nextflow☆26Updated this week
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆22Updated 2 months ago
- Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalabilit…☆70Updated 9 months ago
- Bidirectional WFA (Paper)☆44Updated 8 months ago
- A better, faster way to count guides in CRISPR screens.☆31Updated last month
- Rust wrapper of the BWA C API☆18Updated 3 years ago
- A collection of bioinformatics file format specimens to test against☆47Updated 5 years ago
- seqfu - Sequece Fastx Utilities☆113Updated last week
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…☆23Updated 2 months ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆85Updated 2 months ago
- gia: Genomic Interval Arithmetic☆58Updated 5 months ago
- A cookiecutter template for Snakemake workflows☆57Updated 2 years ago
- Fast FASTQ sample demultiplexing in Rust.☆58Updated last month
- a cythonized, extended version of the interval search tree in bx☆30Updated 5 years ago
- Raw rust bindings for htslib☆10Updated last month
- Build an index for your BAM Index (BAI)☆17Updated 9 years ago
- A pairwise sequence aligner written in Rust☆130Updated 4 months ago