exaloop / seqLinks
Codon's bioinformatics module
☆54Updated 3 weeks ago
Alternatives and similar repositories for seq
Users that are interested in seq are comparing it to the libraries listed below
Sorting:
- Fast interval intersection library☆43Updated last week
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆22Updated this week
- Single-Cell RNA-seq pseudo-aligner☆51Updated last year
- Implicit Interval Tree with Interpolation Index☆41Updated 3 years ago
- A high efficiency binary format for sequencing data☆69Updated 2 months ago
- Fast & accurate alignment of barcoded short-reads☆33Updated 2 years ago
- Build and maintain multiple custom conda environments all in one place.☆39Updated 8 months ago
- Fasten toolkit, for streaming operations on fastq files☆79Updated 4 months ago
- Rust wrapper of the BWA C API☆18Updated 3 months ago
- An efficient index for the colored, compacted, de Bruijn graph☆110Updated 10 months ago
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆137Updated 6 months ago
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆34Updated 2 months ago
- ziglang + htslib☆20Updated 3 years ago
- gia: Genomic Interval Arithmetic☆65Updated last year
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆32Updated 5 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 2 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated last year
- Nextflow language support for Visual Studio Editor☆34Updated last week
- Submit slurm sbatch jobs without a script☆70Updated 3 weeks ago
- Command line utility for manipulating Illumina-generated FASTQ files.☆89Updated this week
- toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files☆22Updated last year
- A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser☆15Updated 2 years ago
- A repository for generating strobemers and evalaution☆79Updated last year
- A better, faster way to count guides in CRISPR screens.☆33Updated 4 months ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆45Updated 2 months ago
- drunk on perbase pileups and lua expressions☆19Updated 3 months ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 2 years ago
- A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.☆53Updated this week
- Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalabilit…☆77Updated last year