NCIP / pathway-interaction-databaseLinks
The Pathway Interaction Database (PID) is software supporting the access and display of information about bio-molecular interactions and cellular processes assembled into signaling pathways.
☆15Updated 9 years ago
Alternatives and similar repositories for pathway-interaction-database
Users that are interested in pathway-interaction-database are comparing it to the libraries listed below
Sorting:
- Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing☆32Updated 7 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 8 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- GEDFN: Graph-Embedded Deep Feedforward Network☆23Updated 6 years ago
- A python package for pathway visualization☆38Updated 4 years ago
- A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.☆33Updated last year
- Code for Russell et al. "A large-scale analysis of bioinformatics code on GitHub"☆32Updated 6 years ago
- Literature mining for T cell relations☆23Updated 3 years ago
- Immunology Informatics - Big Data Analysis in Immunology - Tutorials☆22Updated 7 years ago
- 📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.☆14Updated 7 years ago
- Harmonizing pathway databases using Biological Expression Language (BEL)☆19Updated last year
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆64Updated 4 years ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆67Updated 3 years ago
- API for linked biological knowledge☆65Updated 3 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated 2 years ago
- Function prediction using a deep ontology-aware classifier☆84Updated 2 years ago
- Github repo for the Experimental Factor Ontology (EFO)☆58Updated last week
- Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.☆116Updated last month
- Code for the analyses in the human reference interactome paper.☆27Updated 2 years ago
- User-submitted RNA-seq data analysis tools for BioJupies.☆20Updated 3 weeks ago
- Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases☆50Updated 3 weeks ago
- Converts Ensembl, Uniprot, and HGNC IDs to Entrez Gene Id☆45Updated 2 years ago
- Connect the dots in networks.☆19Updated 4 years ago
- A 3-Dimensional View of Human Metabolism and Disease☆29Updated 7 years ago
- Website for visualizing predicted drug side-effects using L1000 data (http://maayanlab.net/SEP-L1000/)☆10Updated 3 years ago
- A project to capture biological pathway data from academic papers☆29Updated 4 months ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆45Updated 5 years ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆36Updated 7 years ago
- A Python package for benchmarking pathway database with functional enrichment and classification methods☆13Updated 4 years ago
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆22Updated 2 years ago