NCIP / pathway-interaction-database
The Pathway Interaction Database (PID) is software supporting the access and display of information about bio-molecular interactions and cellular processes assembled into signaling pathways.
☆15Updated 9 years ago
Alternatives and similar repositories for pathway-interaction-database:
Users that are interested in pathway-interaction-database are comparing it to the libraries listed below
- Target prioritization using network representation learning☆11Updated 3 years ago
- Code for Russell et al. "A large-scale analysis of bioinformatics code on GitHub"☆31Updated 5 years ago
- A metadata commons to store research software metadata☆41Updated this week
- TCGA data acquisition and processing for Project Cognoma☆20Updated 6 years ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated last year
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆45Updated 5 years ago
- Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing☆32Updated 7 years ago
- A Python package for benchmarking pathway database with functional enrichment and classification methods☆13Updated 4 years ago
- ☆19Updated 2 years ago
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)☆21Updated 3 years ago
- A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.☆32Updated 8 months ago
- 📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.☆14Updated 7 years ago
- GECO (Gene Expression Clustering Optimization; theGECOapp.com) is a minimalistic GUI app that utilizes non-linear reduction techniques to…☆9Updated last year
- ☆41Updated 6 years ago
- User-submitted RNA-seq data analysis tools for BioJupies.☆20Updated 4 years ago
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆16Updated 5 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 8 years ago
- Immunology Informatics - Big Data Analysis in Immunology - Tutorials☆21Updated 7 years ago
- Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.☆12Updated 4 years ago
- A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.☆20Updated last year
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆35Updated 7 years ago
- Universal RObust Peak Annotator☆15Updated last year
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- phenotype-based prioritization of candidate genes for human diseases☆65Updated 2 years ago
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆24Updated 7 months ago
- Pathway visualization and analysis tool for Pathway Commons and other BioPAX data☆13Updated 2 years ago
- Predict mutated T-cell epitopes from sequencing data☆30Updated last month
- A project to capture biological pathway data from academic papers☆29Updated last week
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆49Updated 5 years ago