Alternatives and similar repositories for gdc-docs

Users that are interested in gdc-docs are comparing it to the libraries listed below

• ohsu-comp-bio / g2p-aggregator
  Associations of genomic features, drugs and diseases
  ☆48Updated 2 years ago
• cBioPortal / oncotree
  ☆44Updated last week
• compgenome365 / TCGA-Assembler-2
  TCGA-Assembler 2
  ☆76Updated 6 years ago
• srp33 / TCGA_RNASeq_Clinical
  ☆61Updated 4 years ago
• bhklab / genefu
  R package providing various functions relevant for gene expression analysis with emphasis on breast cancer.
  ☆25Updated 5 months ago
• bowang-lab / IntegrAO
  Integrate Any Omics: Towards genome-wide data integration for patient stratification
  ☆51Updated last month
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆49Updated last year
• AlexsLemonade / OpenPBTA-analysis
  The analysis repository for the Open Pediatric Brain Tumor Atlas Project
  ☆103Updated last year
• Novartis / DRUG-seq
  DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline
  ☆31Updated last month
• YeoLab / single-cell-bioinformatics
  Course material in notebook format for learning about single cell bioinformatics methods
  ☆102Updated 8 years ago
• BIMSBbioinfo / flexynesis
  A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner
  ☆54Updated last week
• biothings / mygene.py
  mygene is an easy-to-use Python wrapper to access MyGene.Info services.
  ☆90Updated 4 months ago
• ucscXena / xenaPython
  Python API for Xena Hub
  ☆52Updated 2 years ago
• Roth-Lab / pyclone-vi
  Fast method for inferring cancer clonal population structure from SNV data.
  ☆53Updated this week
• GSEA-MSigDB / GSEA_R
  Updated implementation of the GSEA-P R application for modern R distributions
  ☆96Updated 3 years ago
• cBioPortal / datahub-study-curation-tools
  Contains tools used by cBioPortal data curators when preparing data for upload into the datahub repos.
  ☆19Updated last month
• ICGC-TCGA-PanCancer / TumorType-WGS
  Classifying tumor types based on Whole Genome Sequencing (WGS) data
  ☆48Updated last year
• TaylorResearchLab / scedar
  Single-cell exploratory data analysis for RNA-Seq
  ☆40Updated 4 years ago
• d3b-center / OpenPedCan-analysis
  The analysis repository for the Open Pediatric Cancer Project
  ☆22Updated last month
• reactome / ReactomeGSA
  R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis
  ☆24Updated 5 months ago
• KarchinLab / open-cravat
  A modular annotation tool for genomic variants
  ☆121Updated this week
• openvax / neoantigen-vaccine-pipeline
  Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines
  ☆80Updated 3 months ago
• TRON-Bioinformatics / seq2HLA
  In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…
  ☆49Updated last year
• slowkow / tftargets
  Human transcription factor target genes from 6 databases in convenient R format.
  ☆86Updated 6 years ago
• bhklab / PharmacoGx
  R package to analyze large-scale pharmacogenomic datasets.
  ☆68Updated 4 months ago
• ebecht / MCPcounter
  ☆58Updated 2 years ago
• theislab / AutoGeneS
  ☆59Updated 3 years ago
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆80Updated 5 months ago
• cancer-genomics / delfi_scripts
  ☆72Updated 3 years ago
• WGLab / Phen2Gene
  Phenotype driven gene prioritization for HPO
  ☆45Updated 3 years ago