NCI-GDC / gdc-docs
Official repository for GDC User Guides in Markdown format
☆58Updated this week
Related projects: ⓘ
- Associations of genomic features, drugs and diseases☆48Updated last year
- ☆35Updated 3 weeks ago
- TCGA-Assembler 2☆74Updated 6 years ago
- Python API for Xena Hub☆51Updated last year
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆48Updated last year
- Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.☆107Updated last month
- Disease Ontology Semantic and Enrichment analysis☆114Updated 3 weeks ago
- CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology☆61Updated last year
- A centralized location for storing curated data from cBioPortal☆171Updated this week
- Deep learning based processing of Atac-seq data☆128Updated last year
- The analysis repository for the Open Pediatric Cancer Project☆15Updated this week
- ☆28Updated last year
- This repository contains Jupyter Notebooks containing GATK Best Practices Workflows☆24Updated 4 years ago
- R package to analyze large-scale pharmacogenomic datasets.☆64Updated 5 months ago
- MyGene.info: A BioThings API for gene annotations☆115Updated last week
- Linking GWAS studies to genes through cis-regulatory datasets☆39Updated last year
- Course material in notebook format for learning about single cell bioinformatics methods☆99Updated 8 years ago
- The analysis repository for the Open Pediatric Brain Tumor Atlas Project☆99Updated last year
- Provide R access to the NCI Genomic Data Commons portal.☆84Updated 3 weeks ago
- MatchMiner: An open source computational platform for matching genomic profiles to precision cancer medicine clinical trials☆38Updated last year
- ☆139Updated 6 years ago
- ☆60Updated 4 years ago
- Scripts to analyze TCGA data☆114Updated 6 months ago
- Easily download publicly available GWAS summary statistics.☆72Updated 9 months ago
- Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis☆43Updated 4 years ago
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆95Updated 2 years ago
- Search across publicly available datasets to find instances where a drug or cell line of interest has been profiled.☆46Updated 6 years ago
- GenoML (genoml2) is an open source Python package. It is an automated machine learning (autoML) platform for genomics data☆26Updated last month
- This is a companion repository for the article "Comparative analysis of machine learning classifiers and calibration algorithms for estim…☆18Updated 2 years ago
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆20Updated 3 years ago