NCI-GDC / gdc-docs
Official repository for GDC User Guides in Markdown format
☆60Updated this week
Alternatives and similar repositories for gdc-docs:
Users that are interested in gdc-docs are comparing it to the libraries listed below
- The analysis repository for the Open Pediatric Brain Tumor Atlas Project☆102Updated last year
- TCGA-Assembler 2☆75Updated 6 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated last year
- mygene is an easy-to-use Python wrapper to access MyGene.Info services.☆86Updated this week
- Linking GWAS studies to genes through cis-regulatory datasets☆39Updated last year
- Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.☆110Updated 2 months ago
- CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology☆65Updated last year
- ☆41Updated this week
- ARCHS4 RNA-seq processing scripts and web server pages.☆54Updated 4 years ago
- Python API for Xena Hub☆52Updated last year
- jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data☆31Updated 5 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆48Updated 5 years ago
- ☆31Updated last year
- Search across publicly available datasets to find instances where a drug or cell line of interest has been profiled.☆46Updated 6 years ago
- ☆57Updated 3 years ago
- A modular annotation tool for genomic variants☆116Updated last month
- Associations of genomic features, drugs and diseases☆48Updated 2 years ago
- Code and documentation for the curation of cellxgene datasets☆39Updated this week
- ☆140Updated 6 years ago
- Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis☆45Updated 4 years ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆61Updated 3 years ago
- ClinVar aggregates information about genomic variation and its relationship to human health. Contact us at 'clinvar@ncbi.nlm.nih.gov…☆73Updated last month
- Prize-Collecting Steiner Forests for Interactomes☆57Updated 7 months ago
- Converts Ensembl, Uniprot, and HGNC IDs to Entrez Gene Id☆45Updated last year
- Fast method for inferring cancer clonal population structure from SNV data.☆52Updated last month
- This repository houses scripts for training genetic scores of omic traits in INTERVAL☆21Updated last year
- An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study☆102Updated 2 years ago
- Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis