NCI-GDC / gdc-docs

Related projects ⓘ

Alternatives and complementary repositories for gdc-docs

• bhklab / PharmacoGx
  R package to analyze large-scale pharmacogenomic datasets.
  ☆66Updated 7 months ago
• compgenome365 / TCGA-Assembler-2
  TCGA-Assembler 2
  ☆74Updated 6 years ago
• ohsu-comp-bio / g2p-aggregator
  Associations of genomic features, drugs and diseases
  ☆48Updated last year
• ucscXena / xenaPython
  Python API for Xena Hub
  ☆52Updated last year
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆48Updated 5 years ago
• mikegloudemans / gwas-download
  Easily download publicly available GWAS summary statistics.
  ☆73Updated 11 months ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆48Updated last year
• cBioPortal / datahub
  A centralized location for storing curated data from cBioPortal
  ☆174Updated this week
• AlexsLemonade / OpenPBTA-analysis
  The analysis repository for the Open Pediatric Brain Tumor Atlas Project
  ☆101Updated last year
• YuLab-SMU / biomedical-knowledge-mining-book
  Biomedical knowledge mining using GOSemSim and clusterProfiler
  ☆72Updated last year
• pathint / reoa
  Relative Expression Ordering Analysis (REOA) package
  ☆20Updated 2 years ago
• mdozmorov / TCGAsurvival
  Scripts to analyze TCGA data
  ☆115Updated 8 months ago
• srp33 / TCGA_RNASeq_Clinical
  ☆60Updated 4 years ago
• bhklab / genefu
  R package providing various functions relevant for gene expression analysis with emphasis on breast cancer.
  ☆25Updated 2 years ago
• gatk-workflows / gatk4-jupyter-notebook-tutorials
  This repository contains Jupyter Notebooks containing GATK Best Practices Workflows
  ☆24Updated 4 years ago
• deweylab / CellO
  CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
  ☆64Updated last year
• cBioPortal / oncotree
  ☆37Updated this week
• chanzuckerberg / single-cell-curation
  Code and documentation for the curation of cellxgene datasets
  ☆38Updated this week
• kundajelab / alzheimers_parkinsons
  Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis
  ☆44Updated 4 years ago
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆101Updated 3 months ago
• RasmussenLab / MOVE
  MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations
  ☆64Updated 3 weeks ago
• OSCA-source / OSCA
  The package wrapping the book, for deployment via the Bioconductor build system.
  ☆79Updated 2 weeks ago
• bcgsc / mirna
  microRNA profiling pipeline
  ☆73Updated 2 years ago
• GSEA-MSigDB / GSEA_R
  Updated implementation of the GSEA-P R application for modern R distributions
  ☆94Updated 2 years ago
• ebecht / MCPcounter
  ☆54Updated 2 years ago
• BioinformaticsFMRP / TCGAWorkflow
  TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages
  ☆42Updated last year
• Orphanet / Orphadata_aggregated
  Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases
  ☆44Updated 3 months ago
• xuyu-cam / atlas_genetic_scores_omic_traits
  This repository houses scripts for training genetic scores of omic traits in INTERVAL
  ☆21Updated last year
• PayneLab / cptac
  Python packaging for CPTAC data
  ☆89Updated 4 months ago
• MaayanLab / appyter-catalog
  A catalog of appyter notebooks
  ☆35Updated 3 weeks ago