MindAI / kmer
A Python code for generating k-mer features for a set of DNA/ genomic sequences.
☆28Updated 8 months ago
Alternatives and similar repositories for kmer:
Users that are interested in kmer are comparing it to the libraries listed below
- ☆24Updated last year
- Converts Ensembl, Uniprot, and HGNC IDs to Entrez Gene Id☆45Updated last year
- CNN architecture for predicting DNA binding sites for Transcription Factors☆52Updated 6 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆81Updated 7 months ago
- Computational Optimization of DNA Activity (CODA)☆56Updated 2 weeks ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆38Updated 3 weeks ago
- code to run sei and obtain sei and sequence class predictions☆102Updated 2 years ago
- ☆18Updated last year
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆39Updated 3 years ago
- deep learning-inspired explainable sequence model for transcription initiation☆94Updated last month
- ☆60Updated 2 years ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆63Updated last year
- ☆65Updated last month
- A python library for creating simulated regulatory DNA sequences☆38Updated 2 years ago
- ☆37Updated 2 years ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆69Updated 4 months ago
- CRISPR Cas9 ontarget prediction software☆26Updated last month
- Package to Score Sequences using Rule Set 3☆11Updated last year
- Predicting gene expression levels from genomic sequences☆52Updated 4 years ago
- ☆73Updated last year
- ☆27Updated 2 months ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Updated 2 years ago
- Microbial analysis in TCGA data☆90Updated last year
- SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence☆21Updated 5 months ago
- Modelling RBP binding preferences to predict RPB binding sites☆11Updated last year
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 3 years ago
- Pandas-based Data Handler for VCF, BED, and SAM Files☆32Updated 3 years ago
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆28Updated 2 years ago
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆90Updated 2 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆41Updated 2 years ago