A Python code for generating k-mer features for a set of DNA/ genomic sequences.
☆32Jul 27, 2024Updated last year
Alternatives and similar repositories for kmer
Users that are interested in kmer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Sep 1, 2024Updated last year
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 3 years ago
- Optimizing weighted gene co-expression network analysis (WGCNA, an R package) with a multi-threaded calculation of the Topological Overla…☆12Jan 5, 2022Updated 4 years ago
- A DL-based framework for sequence and shape motif identification in the human genome☆12May 26, 2023Updated 3 years ago
- This repository contains the reference genome assembly Ash1, built from data collected from an Ashkenazi individual.☆12Feb 2, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Code for building and testing variant ranking strategies☆18Apr 13, 2026Updated 2 months ago
- Code examples of fast and simple k-mer counters for tutorial purposes☆173Mar 10, 2020Updated 6 years ago
- A tool for motif annotation and visualization in tandem repeats.☆14May 26, 2025Updated last year
- ggideogram is a ggplot2 extension package for drawing chromosome diagrams☆17Nov 29, 2024Updated last year
- Fast and accurate set similarity estimation via containment min hash☆42Jul 19, 2024Updated last year
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆33Feb 17, 2026Updated 3 months ago
- numerical derivative lib☆13Mar 18, 2014Updated 12 years ago
- Modeling the genomic regulatory codes of fly, mouse, worm, and fish with deep learning☆17Apr 6, 2021Updated 5 years ago
- ☆14Jun 25, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Predicting drug-target interactions using Lasso with random forest based on evolutionary information and chemical structure☆10Nov 19, 2018Updated 7 years ago
- VNTR annotation using motif selection☆42May 25, 2026Updated 3 weeks ago
- The KEGGgraph package to parse KEGG pathways in R into graph objects☆16Apr 14, 2025Updated last year
- This computational method has been published in BMC genomics as: "Identifying branch-specific positive selection throughout the regulato…☆17Apr 30, 2026Updated last month
- Codebase for the domain adaptation (cross-species TF binding prediction) project.☆12Aug 29, 2022Updated 3 years ago
- Deep learning library for biological sequences. Extension of Fastai and Pytorch.☆39Updated this week
- MGKit: Metagenomics Framework☆15Oct 31, 2022Updated 3 years ago
- ☆13Feb 20, 2022Updated 4 years ago
- ALFASVMLib - A Matlab library for adversarial label flip attacks against SVMs☆13Jun 19, 2015Updated 10 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Code for paper "ToxIBTL: prediction of peptide toxicity based on information bottleneck and transfer learning"☆13Jan 24, 2022Updated 4 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19May 13, 2016Updated 10 years ago
- ☆17Sep 16, 2021Updated 4 years ago
- ☆17Jun 22, 2024Updated last year
- Stupid Simple (ba)Sh Testing - A functional software testing framwork☆23Nov 8, 2023Updated 2 years ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆101May 14, 2026Updated last month
- In-silico Saturation Mutagenesis implementation with 10x or more speedup for certain architectures.☆23Jun 18, 2022Updated 3 years ago
- AI-powered web tool that automatically finds and generates highlight clips from your videos.☆40Updated this week
- Monoclonal Antibody GEnerator (MAGE) - a fine-tuned LLM for generating paired heavy-light antibody variable sequences with predicted bind…☆77Jan 15, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆13Apr 29, 2023Updated 3 years ago
- Build terminal-themed wayland layer shell applications with Rust.☆41Mar 14, 2026Updated 3 months ago
- AMPDeep: Hemolytic Activity Prediction of Antimicrobial Peptides using Transfer Learning☆13Aug 15, 2022Updated 3 years ago
- Code to reproduce Angenent-Mari, N. et al 2020. Deep Learning for RNA Synthetic Biology☆14May 1, 2023Updated 3 years ago
- Octave code for Artificial Neural Networks☆15Oct 20, 2016Updated 9 years ago
- A python tool for numerically encoding protein sequences based on PSSM profile☆12Jun 25, 2021Updated 4 years ago
- repDNA is a Python package to generate various features of DNA sequences incorporating physicochemical properties and sequence-order effe…☆13Jul 16, 2022Updated 3 years ago