Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.
☆58Mar 24, 2021Updated 5 years ago
Alternatives and similar repositories for proteinsolver
Users that are interested in proteinsolver are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Semantic Segmentor for Protein Structures.☆11Dec 20, 2021Updated 4 years ago
- ML toolset for creating TED: The Encyclopedia of Domains☆29May 29, 2025Updated last year
- Code for our paper "Protein sequence design with a learned potential"☆34Aug 5, 2021Updated 5 years ago
- ☆45Aug 29, 2025Updated last year
- ☆11Aug 5, 2020Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆155Apr 16, 2025Updated last year
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Jan 30, 2019Updated 7 years ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆40Jul 25, 2024Updated 2 years ago
- Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures☆49Jan 24, 2022Updated 4 years ago
- ☆61Nov 21, 2022Updated 3 years ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆87Oct 2, 2026Updated last week
- Computes a molecular graph for protein structures.☆59Updated this week
- ☆15Mar 28, 2025Updated last year
- A drop-in replacement for Rosetta Relax☆30Jan 30, 2026Updated 8 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆66May 21, 2025Updated last year
- Graphical Representation of Ancestral Sequence Predictions☆15Mar 6, 2023Updated 3 years ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆37May 28, 2024Updated 2 years ago
- A protein 3D structure prediction application☆67May 5, 2021Updated 5 years ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated 2 years ago
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Aug 12, 2024Updated 2 years ago
- A convinent tool to visualize AlphaFold 3 prediction results with PyMOL and matplotlib☆20May 20, 2024Updated 2 years ago
- Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing☆23Aug 5, 2021Updated 5 years ago
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆129Apr 23, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆19Dec 23, 2024Updated last year
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆26Mar 6, 2025Updated last year
- Sidechain conditioning and modeling for full-atom protein sequence design☆150Nov 11, 2025Updated 11 months ago
- [ICML 24] Robust Optimization in Protein Fitness Landscapes Using Reinforcement Learning in Latent Space☆18Aug 9, 2024Updated 2 years ago
- Code for AlphaFold Distillation for Protein Design☆29Sep 18, 2025Updated last year
- a toolbox for the manipulation, modelling and analysis of molecular structures☆28Updated this week
- ProteinGCN: Protein model quality assessment using Graph Convolutional Networks☆119Jul 25, 2024Updated 2 years ago
- Enzyme Activity Prediction of Sequence Variants onNovel Substrates using Improved Substrate Encodings and Convolutional Pooling☆18Nov 28, 2022Updated 3 years ago
- A deep learning-based predictor of enzyme optimal pH☆13Jun 25, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆64Sep 14, 2023Updated 3 years ago
- Protein folding in Pymol☆149Nov 23, 2025Updated 10 months ago
- Deep generative modeling of protein structural ensembles☆41May 27, 2026Updated 4 months ago
- Feynman-Kac steering for controllable protein diffusion☆39Aug 16, 2026Updated last month
- ☆52Jun 4, 2025Updated last year
- Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure☆327Nov 15, 2025Updated 10 months ago
- Code release for "Improving diffusion-based protein backbone generation with global-geometry-aware latent encoding"☆48Aug 5, 2025Updated last year