Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.
☆60Mar 24, 2021Updated 5 years ago
Alternatives and similar repositories for proteinsolver
Users that are interested in proteinsolver are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Semantic Segmentor for Protein Structures.☆11Dec 20, 2021Updated 4 years ago
- Code for our paper "Protein sequence design with a learned potential"☆34Aug 5, 2021Updated 4 years ago
- Deep generative modeling of protein structural ensembles☆37Apr 20, 2026Updated last week
- ☆43Aug 29, 2025Updated 8 months ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆151Apr 16, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Jan 30, 2019Updated 7 years ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆39Jul 25, 2024Updated last year
- Code release for "Improving diffusion-based protein backbone generation with global-geometry-aware latent encoding"☆48Aug 5, 2025Updated 8 months ago
- Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures☆49Jan 24, 2022Updated 4 years ago
- ☆62Nov 21, 2022Updated 3 years ago
- Protein folding in Pymol☆145Nov 23, 2025Updated 5 months ago
- ☆11Aug 5, 2020Updated 5 years ago
- ☆16Mar 28, 2025Updated last year
- Computes a molecular graph for protein structures.☆59Apr 20, 2026Updated last week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆63May 21, 2025Updated 11 months ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆35May 28, 2024Updated last year
- ☆69Apr 8, 2025Updated last year
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆23Mar 6, 2025Updated last year
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- A convinent tool to visualize AlphaFold 3 prediction results with PyMOL and matplotlib☆19May 20, 2024Updated last year
- A protein 3D structure prediction application☆67May 5, 2021Updated 4 years ago
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Aug 12, 2024Updated last year
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆126Apr 23, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Enzyme Activity Prediction of Sequence Variants onNovel Substrates using Improved Substrate Encodings and Convolutional Pooling☆18Nov 28, 2022Updated 3 years ago
- Code for AlphaFold Distillation for Protein Design☆28Sep 18, 2025Updated 7 months ago
- a toolbox for the manipulation, modelling and analysis of molecular structures☆27Nov 27, 2025Updated 5 months ago
- [ICML 24] Robust Optimization in Protein Fitness Landscapes Using Reinforcement Learning in Latent Space☆16Aug 9, 2024Updated last year
- ☆65Sep 14, 2023Updated 2 years ago
- ProteinGCN: Protein model quality assessment using Graph Convolutional Networks☆119Jul 25, 2024Updated last year
- Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing☆23Aug 5, 2021Updated 4 years ago
- code for IDR binding paper 2025☆74Feb 15, 2025Updated last year
- Calculation of interatomic interactions in molecular structures☆126Sep 3, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Making Protein Language Modeling Accessible to All Biologists☆161Updated this week
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago
- ☆50Jun 4, 2025Updated 10 months ago
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆14Nov 14, 2025Updated 5 months ago
- ML toolset for creating TED: The Encyclopedia of Domains☆26May 29, 2025Updated 11 months ago
- Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure☆321Nov 15, 2025Updated 5 months ago
- Protein Design with Guided Discrete Diffusion☆141Feb 21, 2024Updated 2 years ago