Alternatives and similar repositories for proteinsolver

Users that are interested in proteinsolver are comparing it to the libraries listed below

• ProteinDesignLab / protein_seq_des
  Code for our paper "Protein sequence design with a learned potential"
  ☆80Updated 2 years ago
• hiranumn / DeepAccNet
  Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.
  ☆90Updated 4 years ago
• RosettaCommons / trRosetta2
  Repository for publicly available deep learning models developed in Rosetta community
  ☆119Updated 4 years ago
• sokrypton / GREMLIN_CPP
  GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!
  ☆57Updated 2 years ago
• Graylab / deepH3-distances-orientations
  ☆35Updated 3 years ago
• jproney / AF2Rank
  ☆112Updated 2 years ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆69Updated last year
• dina-lab3D / NanoNet
  ☆50Updated 2 years ago
• aqlaboratory / rgn2
  ☆107Updated last year
• patrickbryant1 / Cfold
  Structure prediction of alternative protein conformations
  ☆79Updated 7 months ago
• ranganathanlab / bmDCA
  Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).
  ☆35Updated 5 years ago
• Graylab / GeoDock
  Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.
  ☆98Updated last year
• kiharalab / GNN_DOVE
  Code for "Protein Docking Model Evaluation by Graph Neural Networks"
  ☆59Updated 2 years ago
• KULL-Centre / _2024_cagiada_stability
  ☆71Updated 6 months ago
• psipred / protein-vae
  Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies
  ☆89Updated 2 years ago
• leandroradusky / pyfoldx
  pyFoldX: python bindings for FoldX.
  ☆49Updated 4 years ago
• oxpig / ABlooper
  Tool for modelling the CDRs of antibodies
  ☆50Updated 2 years ago
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆139Updated last month
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆39Updated last year
• oxpig / Graphinity
  Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity
  ☆50Updated 3 months ago
• delalamo / af2_conformations
  A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
  ☆97Updated 2 years ago
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆70Updated 3 years ago
• AbSciBio / igdesign
  ☆47Updated 9 months ago
• lhatsk / AlphaLink
  AlphaLink: Integrating crosslinking MS data into OpenFold
  ☆70Updated last year
• NREL / EvoProtGrad
  Directed evolution of proteins in sequence space with gradients
  ☆91Updated last year
• j3xugit / RaptorX-3DModeling
  Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…
  ☆98Updated 3 years ago
• anton-bushuiev / PPIRef
  Dataset and package for working with protein-protein interactions in 3D
  ☆96Updated 5 months ago
• casperg92 / MaSIF_colab
  dMaSIF implementation for google colab
  ☆33Updated 2 years ago
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆80Updated last year
• learningmatter-mit / peptimizer
  Peptide optimization with Machine Learning
  ☆77Updated 2 years ago