Alternatives and similar repositories for ReLSO-Guided-Generative-Protein-Design-using-Regularized-Transformers

Users that are interested in ReLSO-Guided-Generative-Protein-Design-using-Regularized-Transformers are comparing it to the libraries listed below

• BorgwardtLab / proteinshake
  Protein structure datasets for machine learning.
  ☆112Updated 6 months ago
• anton-bushuiev / PPIRef
  Dataset and package for working with protein-protein interactions in 3D
  ☆96Updated 6 months ago
• aqlaboratory / rgn2
  ☆109Updated last year
• debbiemarkslab / SeqDesign
  Protein design and variant prediction using autoregressive generative models
  ☆115Updated last year
• ostrokach / proteinsolver
  Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.
  ☆59Updated 4 years ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆119Updated 8 months ago
• MachineLearningLifeScience / meaningful-protein-representations
  ☆110Updated 3 years ago
• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…
  ☆144Updated 7 months ago
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆108Updated last year
• ProteinDesignLab / protein_seq_des
  Code for our paper "Protein sequence design with a learned potential"
  ☆81Updated 2 years ago
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆46Updated 2 years ago
• DeepRank / Deeprank-GNN
  Graph Network for protein-protein interface
  ☆120Updated last year
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆129Updated 4 years ago
• Genentech / equifold
  Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation
  ☆125Updated 2 years ago
• rmrao / msa-transformer
  MSA Transformer reproduction code
  ☆86Updated 4 years ago
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆144Updated 2 months ago
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆151Updated 2 years ago
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆111Updated last month
• Exscientia / abodybuilder3
  ☆71Updated last year
• prescient-design / lobster
  Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation
  ☆134Updated last week
• biolists / biodiffusion
  A list of manuscripts/tools using diffusion on biological enttieis
  ☆97Updated 2 years ago
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆84Updated last year
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆70Updated last year
• Graylab / GeoDock
  Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.
  ☆98Updated last year
• NREL / EvoProtGrad
  Directed evolution of proteins in sequence space with gradients
  ☆93Updated last month
• AbSciBio / unlocking-de-novo-antibody-design
  ☆132Updated last year
• dohlee / antiberty-pytorch
  An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
  ☆25Updated last year
• kirjner / GGS
  This repository implements Gibbs sampling with Graph-based Smoothing
  ☆39Updated last year
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆71Updated 4 years ago
• lujiarui / Str2Str
  Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)
  ☆80Updated last year