Alternatives and similar repositories for ReLSO-Guided-Generative-Protein-Design-using-Regularized-Transformers

Users that are interested in ReLSO-Guided-Generative-Protein-Design-using-Regularized-Transformers are comparing it to the libraries listed below

• aqlaboratory / rgn2
  ☆106Updated last year
• debbiemarkslab / SeqDesign
  Protein design and variant prediction using autoregressive generative models
  ☆106Updated last year
• MachineLearningLifeScience / meaningful-protein-representations
  ☆109Updated 3 years ago
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆99Updated last month
• rmrao / msa-transformer
  MSA Transformer reproduction code
  ☆83Updated 3 years ago
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆42Updated last year
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆100Updated 8 months ago
• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…
  ☆123Updated 2 months ago
• anton-bushuiev / PPIRef
  Dataset and package for working with protein-protein interactions in 3D
  ☆92Updated last month
• NREL / EvoProtGrad
  Directed evolution of proteins in sequence space with gradients
  ☆86Updated 10 months ago
• ProteinDesignLab / protein_seq_des
  Code for our paper "Protein sequence design with a learned potential"
  ☆79Updated last year
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆70Updated last year
• BioinfoMachineLearning / DIPS-Plus
  The Enhanced Database of Interacting Protein Structures for Interface Prediction
  ☆49Updated last year
• ostrokach / proteinsolver
  Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.
  ☆60Updated 4 years ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆114Updated 3 months ago
• LBM-EPFL / PeSTo
  Geometric deep learning method to predict protein binding interfaces from a protein structure.
  ☆134Updated last year
• lamm-mit / ProteinDiffusionGenerator
  Generative method to design novel proteins using a diffusion model
  ☆43Updated 2 years ago
• Profluent-Internships / MMDiff
  Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion
  ☆58Updated last year
• Graylab / GeoDock
  Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.
  ☆96Updated 10 months ago
• blt2114 / ProtDiff_SMCDiff
  Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…
  ☆74Updated last year
• BorgwardtLab / proteinshake
  Protein structure datasets for machine learning.
  ☆110Updated 2 months ago
• biomed-AI / GraphSite
  GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures
  ☆60Updated 10 months ago
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆126Updated last month
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆154Updated 2 years ago
• idmjky / EvolvePro
  PLM based active learning model for protein engineering
  ☆81Updated 10 months ago
• jertubiana / ScanNet
  ☆128Updated last week
• melobio / EvoPlay
  ☆73Updated last year
• alex-hh / deep-protein-generation
  ☆58Updated 2 years ago
• biolists / biodiffusion
  A list of manuscripts/tools using diffusion on biological enttieis
  ☆97Updated last year
• jproney / AF2Rank
  ☆108Updated 2 years ago