KrishnaswamyLab / ReLSO-Guided-Generative-Protein-Design-using-Regularized-Transformers
a Transformer-based neural network for generating highly optimized protein sequences called Regularized Latent Space Optimization (RELSO)
☆86Updated last year
Alternatives and similar repositories for ReLSO-Guided-Generative-Protein-Design-using-Regularized-Transformers:
Users that are interested in ReLSO-Guided-Generative-Protein-Design-using-Regularized-Transformers are comparing it to the libraries listed below
- ☆108Updated 2 years ago
- ☆104Updated last year
- MSA Transformer reproduction code☆72Updated 3 years ago
- Protein structure datasets for machine learning.☆105Updated 7 months ago
- ☆68Updated last year
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆71Updated 9 months ago
- Protein design and variant prediction using autoregressive generative models☆95Updated last year
- Protein design and variant prediction using autoregressive generative models☆23Updated last year
- ☆58Updated 3 years ago
- Code for our paper "Protein sequence design with a learned potential"☆80Updated last year
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated 10 months ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆96Updated 4 months ago
- A geometric deep learning pipeline for predicting protein interface contacts. (ICLR 2022)☆63Updated 2 years ago
- dMaSIF implementation for google colab☆30Updated last year
- Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.☆56Updated 3 years ago
- Dataset and package for working with protein-protein interactions in 3D☆89Updated this week
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆120Updated last year
- AbLang: A language model for antibodies☆134Updated last year
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆100Updated last month
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆59Updated 9 months ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆88Updated 6 months ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆106Updated last month
- Nucleic Acids Research 2024:RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆55Updated 6 months ago
- Aligning protein generative models with experimental fitness☆82Updated 3 months ago
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆48Updated last year
- ☆35Updated 2 years ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆37Updated 8 months ago
- ☆43Updated 3 months ago
- Masif seed paper repository☆143Updated last year
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆60Updated 6 months ago