Alternatives and similar repositories for Cytomine-bootstrap

Users that are interested in Cytomine-bootstrap are comparing it to the libraries listed below

• DigitalSlideArchive / HistomicsUI
  A Girder plugin for pathology image annotations and analysis.
  ☆72Updated this week
• haranrk / DigiPathAI
  Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay
  ☆72Updated 5 months ago
• DigitalSlideArchive / digital_slide_archive
  The official deployment of the Digital Slide Archive and HistomicsTK.
  ☆124Updated this week
• AICAN-Research / FAST-Pathology
  ⚡ Open-source software for deep learning-based digital pathology
  ☆134Updated last year
• cytomine / Cytomine-core-legacy
  Cytomine-core-legacy is the main web server implementing the Cytomine API of the legacy edition
  ☆69Updated 2 years ago
• DeepMicroscopy / SlideRunner
  SlideRunner is a tool for massive cell annotations in whole slide images
  ☆79Updated last year
• PingjunChen / tissueloc
  Whole Slide Digital Pathology Image Tissue Localization
  ☆44Updated last year
• imi-bigpicture / wsidicomizer
  Python library for converting WSI files to DICOM
  ☆75Updated 2 weeks ago
• MIDA-group / CytoBrowser
  CytoBrowser, a JavaScript and Node.js driven environment for fast and accessible collaborative online visualization, assessment, and anno…
  ☆19Updated last month
• imi-bigpicture / wsidicom
  Python package for reading DICOM WSI file sets.
  ☆44Updated 3 weeks ago
• CBICA / HistoReg
  Framework for registration of sequential digitized histology slices
  ☆28Updated 3 years ago
• PingjunChen / pyslide
  Digital Pathology Whole Slide Image Analysis Toolbox
  ☆48Updated 2 years ago
• smujiang / Re-stained_WSIs_Registration
  Re-stained whole slide image alignment
  ☆33Updated last year
• choosehappy / QuPathGeoJSONImportExport
  Coincides with blogpost for using geojson and shapely
  ☆32Updated 4 years ago
• choosehappy / QuickAnnotator
  An open-source digital pathology based rapid image annotation tool
  ☆78Updated last week
• DSLituiev / slideslicer
  a toolbox for manipulation of digital pathology slides and annotations
  ☆19Updated 4 years ago
• zhaoxuanma / Deeplearning-digital-pathology
  Full package for applying deep learning to virtual slides.
  ☆68Updated 6 years ago
• bgilbert / anonymize-slide
  Delete the label from a whole-slide image
  ☆65Updated 4 years ago
• DigitalSlideArchive / CNNCellDetection
  This repository contains adaptations of the state-of-the-art deep learning based object detection models for the detection of cell nuclei…
  ☆27Updated 2 years ago
• andreped / NoCodeSeg
  🔬 Code-free deep segmentation for computational pathology
  ☆53Updated last year
• Pathomation / pma_python
  Python wrapper library for PMA.start, a universal viewier for whole slide imaging and microscopy
  ☆30Updated 6 months ago
• nadeemlab / ImPartial
  Interactive deep learning whole-cell segmentation and thresholding using partial annotations
  ☆39Updated last week
• computationalpathologygroup / WSICS
  WSICS
  ☆30Updated 6 years ago
• SarderLab / H-AI-L
  A human in the loop solution to machine learning for pathologists (easy semantic segmentation of WSI)
  ☆51Updated 4 years ago
• Borda / dataset-histology-landmarks
  Dataset: landmarks for registration of histology images
  ☆32Updated 4 years ago
• uncbiag / OAI_analysis_2
  Image analysis approaches to analyze the OAI magnetic resonance images
  ☆26Updated 6 months ago
• vessap / vessap
  Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning
  ☆72Updated 3 years ago
• navidstuv / NuClick
  Interactive Segmentation of Nucleus
  ☆63Updated 2 years ago
• oncoray / mirp
  Medical Image Radiomics Processor
  ☆68Updated last month
• bhklab / med-imagetools
  Transparent and reproducible medical image processing pipelines in Python.
  ☆47Updated last week