Alternatives and similar repositories for Cytomine-bootstrap:

Users that are interested in Cytomine-bootstrap are comparing it to the libraries listed below

• DigitalSlideArchive / digital_slide_archive
  The official deployment of the Digital Slide Archive and HistomicsTK.
  ☆112Updated this week
• bgilbert / anonymize-slide
  Delete the label from a whole-slide image
  ☆62Updated 3 years ago
• imi-bigpicture / wsidicomizer
  Python library for converting WSI files to DICOM
  ☆66Updated last week
• DigitalSlideArchive / HistomicsUI
  A Girder plugin for pathology image annotations and analysis.
  ☆60Updated this week
• choosehappy / QuickAnnotator
  An open-source digital pathology based rapid image annotation tool
  ☆75Updated this week
• AICAN-Research / FAST-Pathology
  ⚡ Open-source software for deep learning-based digital pathology
  ☆125Updated 7 months ago
• andreped / NoCodeSeg
  🔬 Code-free deep segmentation for computational pathology
  ☆53Updated 7 months ago
• Pathomation / pma_python
  Python wrapper library for PMA.start, a universal viewier for whole slide imaging and microscopy
  ☆30Updated last month
• uncbiag / OAI_analysis_2
  Image analysis approaches to analyze the OAI magnetic resonance images
  ☆22Updated 3 weeks ago
• haranrk / DigiPathAI
  Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay
  ☆67Updated this week
• PingjunChen / tissueloc
  Whole Slide Digital Pathology Image Tissue Localization
  ☆44Updated last year
• computationalpathologygroup / WSICS
  WSICS
  ☆30Updated 5 years ago
• zhaoxuanma / Deeplearning-digital-pathology
  Full package for applying deep learning to virtual slides.
  ☆67Updated 6 years ago
• navidstuv / NuClick
  Interactive Segmentation of Nucleus
  ☆61Updated 2 years ago
• imi-bigpicture / wsidicom
  Python package for reading DICOM WSI file sets.
  ☆37Updated last month
• DIAGNijmegen / pathology-he-auto-augment
  H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.
  ☆52Updated last year
• AICAN-Research / H2G-Net
  🚀 H2G-Net: Segmentation of breast cancer region from whole slide images
  ☆24Updated 2 months ago
• DSLituiev / slideslicer
  a toolbox for manipulation of digital pathology slides and annotations
  ☆19Updated 4 years ago
• SarderLab / H-AI-L
  A human in the loop solution to machine learning for pathologists (easy semantic segmentation of WSI)
  ☆51Updated 4 years ago
• ImagingDataCommons / IDC-Tutorials
  Self-guided notebook tutorials to help get started with using IDC
  ☆29Updated this week
• smujiang / Re-stained_WSIs_Registration
  Re-stained whole slide image alignment
  ☆32Updated last year
• choosehappy / QuPathGeoJSONImportExport
  Coincides with blogpost for using geojson and shapely
  ☆30Updated 4 years ago
• jgamper / compay-syntax
  Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.
  ☆54Updated 2 years ago
• DIAGNijmegen / pathology-artifact-detection
  Quality control of whole-slide images through multi-class semantic segmentation of artifacts
  ☆30Updated 11 months ago
• DigitalSlideArchive / CNNCellDetection
  This repository contains adaptations of the state-of-the-art deep learning based object detection models for the detection of cell nuclei…
  ☆27Updated 2 years ago
• Borda / dataset-histology-landmarks
  Dataset: landmarks for registration of histology images
  ☆32Updated 4 years ago
• cytomine / Cytomine-core
  Cytomine-Core is the main web server implementing the Cytomine API
  ☆69Updated last year
• oncoray / mirp
  Medical Image Radiomics Processor
  ☆59Updated this week
• DigitalSlideArchive / DSA-WSI-DeID
  A workflow for redacting PHI from whole slide images (WSI) based on the Digital Slide Archive.
  ☆15Updated last week
• ksugar / qupath-extension-sam
  QuPath extension for Segment Anything Model (SAM)
  ☆94Updated 4 months ago