Alternatives and similar repositories for Cytomine-bootstrap:

Users that are interested in Cytomine-bootstrap are comparing it to the libraries listed below

• bgilbert / anonymize-slide
  Delete the label from a whole-slide image
  ☆63Updated 4 years ago
• PingjunChen / tissueloc
  Whole Slide Digital Pathology Image Tissue Localization
  ☆44Updated last year
• DigitalSlideArchive / HistomicsUI
  A Girder plugin for pathology image annotations and analysis.
  ☆67Updated last week
• serrob23 / falsecolor
  FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…
  ☆30Updated 3 years ago
• choosehappy / QuickAnnotator
  An open-source digital pathology based rapid image annotation tool
  ☆76Updated last week
• AICAN-Research / FAST-Pathology
  ⚡ Open-source software for deep learning-based digital pathology
  ☆131Updated 9 months ago
• DeepMicroscopy / SlideRunner
  SlideRunner is a tool for massive cell annotations in whole slide images
  ☆77Updated last year
• smujiang / Re-stained_WSIs_Registration
  Re-stained whole slide image alignment
  ☆32Updated last year
• zhaoxuanma / Deeplearning-digital-pathology
  Full package for applying deep learning to virtual slides.
  ☆68Updated 6 years ago
• DigitalSlideArchive / digital_slide_archive
  The official deployment of the Digital Slide Archive and HistomicsTK.
  ☆118Updated this week
• andreped / NoCodeSeg
  🔬 Code-free deep segmentation for computational pathology
  ☆53Updated 9 months ago
• cytomine / Cytomine-core
  Cytomine-Core is the main web server implementing the Cytomine API
  ☆69Updated 2 years ago
• computationalpathologygroup / WSICS
  WSICS
  ☆30Updated 5 years ago
• haranrk / DigiPathAI
  Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay
  ☆70Updated 2 months ago
• DSLituiev / slideslicer
  a toolbox for manipulation of digital pathology slides and annotations
  ☆19Updated 4 years ago
• DigitalSlideArchive / CNNCellDetection
  This repository contains adaptations of the state-of-the-art deep learning based object detection models for the detection of cell nuclei…
  ☆27Updated 2 years ago
• choosehappy / QuPathGeoJSONImportExport
  Coincides with blogpost for using geojson and shapely
  ☆31Updated 4 years ago
• PingjunChen / pyslide
  Digital Pathology Whole Slide Image Analysis Toolbox
  ☆48Updated last year
• oncoray / mirp
  Medical Image Radiomics Processor
  ☆63Updated this week
• uncbiag / OAI_analysis_2
  Image analysis approaches to analyze the OAI magnetic resonance images
  ☆23Updated 3 months ago
• DigitalSlideArchive / DSA-WSI-DeID
  A workflow for redacting PHI from whole slide images (WSI) based on the Digital Slide Archive.
  ☆15Updated last week
• tcxxxx / WSI-analysis
  Python scripts for automatic Whole-Slide Image preprocessing.
  ☆36Updated 3 years ago
• Booritas / slideio
  ☆62Updated this week
• CBICA / HistoReg
  Framework for registration of sequential digitized histology slices
  ☆28Updated 3 years ago
• ksugar / qupath-extension-sam
  QuPath extension for Segment Anything Model (SAM)
  ☆103Updated 2 weeks ago
• AICAN-Research / H2G-Net
  🚀 H2G-Net: Segmentation of breast cancer region from whole slide images
  ☆25Updated 4 months ago
• nadeemlab / ImPartial
  Interactive deep learning whole-cell segmentation and thresholding using partial annotations
  ☆36Updated this week
• imi-bigpicture / wsidicomizer
  Python library for converting WSI files to DICOM
  ☆70Updated 2 weeks ago
• DIAGNijmegen / pathology-whole-slide-data
  A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
  ☆98Updated 4 months ago
• DIAGNijmegen / pathology-he-auto-augment
  H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.
  ☆52Updated last year